LOC111194344


Basic Information

Item Value
gene id LOC111194344
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39718689 ~ 39720722 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678251.1
ATGGGCTGTAGCAGGGCAGATGACAGTAAGGTTTTGAAGACATTTGTTCTGACGGACTTGGAAGTTTGTGGTGTGGAGGAGGATACATACATAGACCTGCCCAGAGTATTCACCCATAGCTTCATTCCAGTGCAAAAGGAGAATATTCCTAAGCCAGAAGACATTGCAAGGTGGCCTTATCTGAAAGATGTGTCTCTACCTCAGATCAATGCTGAAGTGGGACTTCCAGGTTTCCATGAAGACTATAAGATGTTCATGAAGGATGTCATTAAGAATGGATATGCAGTCAAGGTTCCCAGTGAGCAACTACTGCATGATGATGGCAGGGTGTGGTACATTCCCCACCACGGAGTGTATCACcccaagaaaaagaaaattcgGATTGTCTTCGATTGCACTGCAACCTACAGAGGAGTCTCTCTAAACGAGCAGTTGCTGCAGGGCCCAAACCTTACCAATACTCTTGTTGGTGTTCTAACGAGATTCAGGCAAGAGCCTGTGGCATTAATGGCAGATGTCAAAGCCATGTTCTATCAGGTTAAAGTTTCTGAAGAAGATGCAGATCTTCTACGTTTCCTGTGGTGGCCAGATGGCAACCTGGATGAAGAGATGGAAGAATTCAGAATGACTGTTCACCTTTTCGGTGCGACATCTTCACCCAGTTGTGCATCTTATGCCTTAAGGAAAACAGCAGAGGACAACAAGAAAACAGCAAGCCCAGAAGCAGCTGACACAGTTCTTCACAACTGTTATGTAGATGACTTCTTGAAGTCAGTTCCTTCTGAAGCTCAGGCAGTTCAACTTGTGAAAGACGTAAGAGCACTGTGCGCCATGGGTGGCTTTCAGCTGACTAAGTGGGTCAGTTCCAGTAAGGCTGTTCTGTTGACCATCCCTGAAGAAGATCGTGCAACTGATGTCAAAGACTTGGACCTGAGCCACAGCATCCCTCCCATGGAGCGTGCCCTGGGTGTCCAGTGGCGCACAGACTCAGACAGTTTCCAATTCCAACTGAATGTTCCTGAAAGGCCAAAAACAAGGCGGGGGATTCTGTCTGTAGTTAGTGCATTGTATGACCCCCTAGGACTATTGGCGCCAGTTATTCTGCCCGCAAAGCAGATCCTGAGGACTCTTTGTGAACAAAAGTGTGGCTGGGATCAAGAAATCAAAGACTCTCAGGCAGTCAGATGGCAAGAATGGTTGGCAGAAATGAAACTGCTAGAGGGATTCTCAGTAAGCAGGTGTGTGAAGCCAATGGCATTTGGACCTTTGCAGTCAGCACAACTACATCACTTTGCTGATGCATCAGAGACCGGCTATGGCACTGCCTCCTACCTGCTCCTGTCAAACCAAGCTGGTGAGAAATGTTGCACTCTCTTAATTGGAAAAGCCAGAGTAGCCCCTTTGAAACTTGTAACAATCCCACAGCTAGAATTAACAGCTGCGGTGGTGGCTGTGAAAATGGACCAGATGTTGCAACGTGAACTACAGGTGCCACTCCAAGATTCCATCTTTTGGACTGACAGCACTACAGTTCTGAGATACATTGGAAACAAGCATAGTCGCTTCAAGACTTTCGTCGCAAACAGAGTCGCAGTCATAAGGGAACATAGCCAGCTTTCCCAATGGCATTATGTGAAGTCAGGAGAAAATCCAGCGGACCAAGCCTCAAGGGGGATGAAAGTGAAGGAGTTTCTAGAAAACAAGACTTGGTTGCAAGGCCCAAGTTTCCTTCTAAAGTCTCAGGAAGATTGGCCGGAATTGCCTTATGTGAATGACATACCCCAAGATGACCCTGAGGTCAAGTCCTGTGCAATAAAGGTTGAAGAGGATGGGCAGAAGAAGGTGTTGGCTCTGGATAAGCTGATCGTGTACTACTCTGATTCTGCTACATTTGAGAGAGGTCTTTATGGACAAAATCACATTGTCAGAGAGCTGTCCAAACCAAAAAGAGCTGCTGACAACAGCACACATGAAAAAGTGTCGCCTGATGCTGAAACCAACTTTGCTCACCATAAAGGACTTGGAAGAGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678251.1 True 2034 mRNA 0.47 1 39718689 39720722

Neighbor

gene id symbol gene type direction distance location
LOC103035599 LOC103035599 coding downstream 12845 39704128 ~ 39705844 (-)
LOC103035296 LOC108432792 coding downstream 17983 39699292 ~ 39700706 (-)
LOC103036931 LOC103036931,LOC108432867,LOC108274078 coding downstream 25507 39691978 ~ 39693182 (-)
LOC103032818 NA coding downstream 51610 39665304 ~ 39667079 (-)
LOC103037563 LOC108432817 coding downstream 56373 39659836 ~ 39662316 (-)
LOC111191820 NA coding upstream 6792 39727514 ~ 39728585 (-)
LOC111191823 NA coding upstream 13125 39733847 ~ 39734968 (-)
LOC103035909 NA coding upstream 29300 39750022 ~ 39751990 (-)
LOC103031565 NA coding upstream 34755 39755477 ~ 39756680 (-)
LOC103031261 NA coding upstream 44733 39765455 ~ 39766663 (-)
LOC111196215 NA non-coding downstream 194415 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 219223 39499043 ~ 39499466 (-)
LOC111196213 NA non-coding downstream 238345 39472824 ~ 39480344 (-)
LOC111191798 NA non-coding downstream 509424 39207480 ~ 39209265 (-)
G24860 NA non-coding downstream 530411 39187782 ~ 39188278 (-)
G24964 NA non-coding upstream 3733 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 98554 39819276 ~ 39825981 (-)
G24997 NA non-coding upstream 124651 39845373 ~ 39848209 (-)
G25128 NA non-coding upstream 662879 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 1005077 40725799 ~ 40726362 (-)
G24903 NA other downstream 260500 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 371773 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 393987 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 791696 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 795772 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 454540 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1493699 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1715319 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2135373 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 2148302 41869024 ~ 41880424 (-)

Expression


Co-expression Network