LOC103039464


Basic Information

Item Value
gene id LOC103039464
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42914040 ~ 42916599 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678277.1
ATGAGTCAAATTTTCTGTGACAGGGgagctgagtggtccagcgatcTAAAGCGCTGCTACTGTGAGCGAGAGaatgaaataAAGGAACTTCAGAGGACACTCCAACAGAGAATTCTGGAGACGCAGAAGAAGCTTCAGGAACTGGAACAGAGGATGAACACTCTTAAGcgATCTGCACAGgcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGACTGAACTGAGTGGAGCTGAAGAACTCCTGGAGAAACTGCAGCAGGAGATCACTGATCTAAAGAGGAGACACACTGAACTGGAGCAGCTTTCATACACAGAGGATCACATCCATTTCCTTCAGAGTTTCcagtctctctgtgtctcttctgGATCTGAGGACTCTCCCAGCATCTCTGTCCATCAGCGTCCCTCATTTGATGGAGTGAGGAAATCTCTCTCTGAGCTGAAAGAACGACTAGAGGAATTCTGCAGAGAGGAATTCGGGAAAATCTCTACATGTGTTCAGATTTTACCATCAGAGCCAAAAACCAGAGAGGACTTTCTGCAGTatttctGTTATCTGACTCTGGATCCCAACACGGCACATCAGCACCTCATTTTGTCCGAGGAGAACCGAGTGGTGATGGACAGTAATAATGTTCAGTCATACcctgatcatccagagagatttgaAAACTACAGGCAGGTGTTGAGTAAGGAGAGTGTGAGTGGGCGCTGCTATTGGGAGATTGAGAAGAGCAAAGTGGGGACTGTTTACTTATCAGTCTCATATAAAGAGATCAGCAGGAAAGGAGGGGGTAATAATTGTTGGTTCGGCTTCAACCCTCAGTCCTGGCGTCTGGAATGTTCTTCCTCTCCCTTCTTCATACAAAACAGCATTCGGACTGGTATCTCAGCGACACCATCCTCCAGaataggagtgtatgtggatcACAGTGCAGGAATTCTGTCCTTCTACAATGTCTCTGACACAATGACTCTGCTACACACAGCCCACACTACATTTACTCACCCCCTCTATGCTGGATTAGGGGTTTATTATGGATCAACTGTCAAGTTATGTGATAGAAACTGATCATCTACTgaattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678277.1 True 1152 mRNA 0.46 6 42914040 42916599

Neighbor

gene id symbol gene type direction distance location
sod2 sod2,LOC107732630 coding upstream 147943 42762414 ~ 42766097 (+)
LOC103035072 NA coding upstream 197728 42555881 ~ 42716312 (+)
acbd3 acbd3,LOC107549117,LOC107732644,LOC107726445,LOC107601671,LOC107668205 coding upstream 362967 42539342 ~ 42551073 (+)
LOC103034213 NA coding upstream 389967 42516732 ~ 42524073 (+)
LOC103042546 LOC108411077 coding upstream 417722 42403920 ~ 42496318 (+)
otof otof coding downstream 5994 42922593 ~ 43034392 (+)
LOC103041928 pdia6,LOC108411347,LOC107732640,LOC107693218,LOC107549125 coding downstream 127593 43044192 ~ 43051887 (+)
LOC103031260 NA coding downstream 175566 43092165 ~ 43111188 (+)
LOC103030938 NA coding downstream 199179 43115778 ~ 43135388 (+)
LOC103030407 LOC108411385 coding downstream 220184 43136783 ~ 43171235 (+)
G25662 wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 non-coding upstream 154069 42753358 ~ 42759971 (+)
G25657 NA non-coding upstream 184531 42727634 ~ 42729509 (+)
G25647 NA non-coding upstream 195651 42717658 ~ 42718389 (+)
G25650 NA non-coding upstream 307912 42605901 ~ 42606128 (+)
G25625 NA non-coding upstream 394098 42519641 ~ 42519942 (+)
G25828 hsp90aa1.1,LOC108411456,LOC101068853,LOC103369947,LOC108231826,LOC105919227,LOC102218115,LOC103457915,LOC103024454,LOC108257813,LOC108411468,LOC107704347,LOC107557012 non-coding downstream 412928 43329527 ~ 43341729 (+)
G25834 mgat2,LOC107728126,LOC107564584,LOC107704380 non-coding downstream 434296 43350895 ~ 43356027 (+)
LOC111191905 NA non-coding downstream 547001 43463600 ~ 43465928 (+)
G25888 NA non-coding downstream 567496 43484095 ~ 43484399 (+)
G25893 NA non-coding downstream 600199 43516798 ~ 43517094 (+)
fgfr1op NA other upstream 397398 42497722 ~ 42516642 (+)
G25601 NA other upstream 521102 42391640 ~ 42392938 (+)
G24972 NA other upstream 3088322 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 3516162 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 3573069 39325083 ~ 39340971 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 343021 43259620 ~ 43262099 (+)
rps29 NA other downstream 443870 43360469 ~ 43363444 (+)
G25879 NA other downstream 505172 43421771 ~ 43422046 (+)
G25880 NA other downstream 507793 43424392 ~ 43424906 (+)
LOC103033920 LOC108416105 other downstream 573724 43490323 ~ 43494316 (+)

Expression


Co-expression Network