LOC111194348


Basic Information

Item Value
gene id LOC111194348
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46049834 ~ 46052723 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678303.1
ATGTGCTTCCAAATTCCTACTCTCATCTCCTGCAACACCCGTAGACACCGGCATCAGGGCAGAAACCGCAATCCTAGCAACCTGTTGTACCCACCTAGTTCACTAAGTTCTCAGGTGTTGGTGCATGGGGGAATCTGGAATTGCCATTCTGCAGTTCTGAAGGCTGACTTCATCACAGCTCTTGCCTCTGCTCAATCTCTGGACTTCCTGGCTCTGACTGAGACTTGGATCACTCCAGAGAACTCTGCAACTCCAGCTGCCCTGTCATCTGCTTTCGCCTTCTCCCCACTCTCCACGGCCAACCGGCAGGGGTGGTGGAACTGGCCTGCTTCTGTCTCGCCAGCAAAATCCTCTCCAGCCACCCCATGGCTGTCGGATGTTCTACGCAACAACCAGGTAACTGCTGCAAAATCCTCTTTCTACAAAAGGAAACTGGAAGAATCAGCATCTGACCCTCGCAAACTCTTCACCATCTTCTCATCTCTGCTAAACCCTCCCACTCCTCAACCTCCCACAACCCTCTCCCCGGATGATTTTGTCAACTTCTTTGAGGAGAAAACAATTGCTCCTGACCTCCTTCCGTTCATCACTCACATCATTAACACCTCTCTATCATCTGGTCATGTTCCATCAACTTTTAAGACTGCCAGAGTGGTTCCTATCTTGAAGAAACCAACTCTAGACAGCTTGGATGTTGGCAACTACAGGCcagtttctctcctctctttcctttctaaAGTCCTTGAGCGTGCTGTCTACAAccaactttctctctttctcactcagaaCAATCTTCAGGATCCAAACCAGTCTGGCTTCAAACCTGCACACTCTACTGAAACTGCCCTCATTGCAGTTACAGAGAAGCTCCATGCAGCAAAAGCAACCAACCTGTCATCTGTTCTGATTCTCCTTGATCTCTCTGCTGCtttcgacacggtcaaccacaGCATTCTCCTTTCCATCCTCACCAGCCTTGGaatcactggctctgcatggcagTGGTTTGCATCGTACCTGGAGGACCGTTCCTACCAGgtttcatcccgcatctcagcatgtctcagTGATGTCTCGATGTGGATGAGTTCTCATCACCTAAAACTCAACCCCAGcaagactgaccttctgttCATCCCAGGAACTACGAGCCTTCACAACAATATCTCCATCTCTTTCGAcaactcactggtcactccatcggCAGAAGCACGAAGCCTTGGtgtagtaatggatgaccagttatcattctcgagccatattgcaaatctgactcggtcatgcagatttctcctgtacaacatccgaagaattcgactgtttctgtctcaggaagccactcaggtgcttgtgcagtctcttgtcatctcaagacttgactactgcaactctctactggctggtcttccactgagagccaccaaaccactacaattaattcagaatgctgcagcacgactcgtcttcaatcttccgaagttcagtcatgtgactcctttgctgcgttccctccactggcttcctgttgccgcccgcatccgattcaaaaccctgacgctggcctacaaggcaaaaaacggaccagctccttcatacttgatggcgatggtcaaagccagatctgcaccaagagctcttagagcttccagtacggctcggcttgaacctccatcactcaaaacacacagaaaacagacatccagactcttctctgtgctggcaccaaggtggtggaatgaacttccactggatgtcagaacagcagagtcactcgccgtcttcaaacgtcgactgaagacacatctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678303.1 True 1806 mRNA 0.50 5 46049834 46052723

Neighbor

gene id symbol gene type direction distance location
fermt1 fermt1,LOC106571740 coding downstream 518441 45515195 ~ 45531393 (-)
trmt6 trmt6,LOC107593280 coding downstream 537318 45501651 ~ 45512516 (-)
gpcpd1 gpcpd1,LOC107697181 coding downstream 584222 45451286 ~ 45465612 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding downstream 601668 45441438 ~ 45448166 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding downstream 683988 45358910 ~ 45365846 (-)
LOC103025404 NA coding upstream 25485 46078208 ~ 46106169 (-)
LOC103025714 NA coding upstream 55849 46108572 ~ 46129242 (-)
LOC103029737 lrfn5b,LOC108411613,LOC108257655,LOC107712211,LOC107564320 coding upstream 265241 46317964 ~ 46329110 (-)
LOC103042705 samd15 coding upstream 276683 46329406 ~ 46337541 (-)
LOC103043020 LOC103043020,LOC108411620,LOC108258012,LOC103375802 coding upstream 299486 46352209 ~ 46360826 (-)
G26564 NA non-coding downstream 200242 45847617 ~ 45849592 (-)
G26563 NA non-coding downstream 204903 45843174 ~ 45844931 (-)
LOC111197418 NA non-coding downstream 306984 45733316 ~ 45742850 (-)
LOC111191909 NA non-coding downstream 445673 45597587 ~ 45604161 (-)
G26386 NA non-coding downstream 639798 45408433 ~ 45410036 (-)
G26612 NA non-coding upstream 13925 46066648 ~ 46067188 (-)
G26605 NA non-coding upstream 23413 46076136 ~ 46162099 (-)
G26663 NA non-coding upstream 308995 46361718 ~ 46361918 (-)
G26666 NA non-coding upstream 343238 46395961 ~ 46409064 (-)
LOC111197648 NA non-coding upstream 525564 46578287 ~ 46599431 (-)
G26588 NA other downstream 114212 45935153 ~ 45935622 (-)
G26388 NA other downstream 612249 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 1164033 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 1179144 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 1250329 44769264 ~ 44799505 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 239364 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 374694 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 466148 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 480972 46533695 ~ 46535835 (-)
G26754 NA other upstream 651624 46704347 ~ 46738736 (-)

Expression


Co-expression Network