LOC111194350


Basic Information

Item Value
gene id LOC111194350
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46364129 ~ 46374917 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678311.1
CCTGGAGCCTTCATTAGAAAAATGCATTGCTCGCTACAAGCAAGATTCATTGAGCACATAATGCAAAATAATCTCTCCCAGGAGCTTCTATTGAAACCACTGCCACCAAAGAGCATTAGTCATTCACAAGAAACTTGGGCCAAGAGGGAGGAAGCCAACAGCACAACCACCAAGTCCAAATACTTCTCAGCTCCTCAAAGTGTGCCACTTCCacaggggaagaaaaaaaagggaaaagaaaagaaaagttgtGGAAAAGATGCAGATGGAAAAGGTCCCAAAGATGTGTCACAGAATAAACCATGCATGCCTGCTGACGAGGTTGAGACTTTGTGGAAAAATGACCCCACTGACCTGGTCGTATCAATTTTACGAGCTCCAGACAAAAAATTGGAGTTTTTGTTGCGTCAAAGAGAATTTCAGACACTGAGGCCTCATGAGTGGATAGCCGGTGAGGCTATAGAGAGCTACTTCAGAACCATCTTGAATCATGAGGACACTACTTGCAGGTTGTTCCAGCTCAGCCATTACACAACAGGAGTGGTTTTATATGGCACAAGAGAACAATGTGCCCGACAAAGCTTGAGAAATGTCAACTTTGAGGCGTATGATGGAGTCATCAGCTTTGTGAACGTTAAAAGTGTGCACTGGAGGTTTGTGTACATACATGCCCTGTCAAAAGAGATTTTTGTGCTTGACCCTCAACGTGGCTGTGATGAAATGGAGGAGGCCAGACAGGCAGCACGCAAATTTGGACAGTACTTCAAAATGCGACACAATCAGCATGGAAGAGAGGACTGGGTGAACATCCAGTGGAAACCTGCGACAATTCAACACACATTTCAAAGGGATGGTGTGAGCTGTGGTGTCTTTGTGATGCAGATGGCCAAGAGTGTGGTTGAGGAATTTCCAAGAATCCCCCAAATTGTGAAAATCAATcccacaaaaaaacagatgtgTCAATACAGGGGACAAATGGCTCTGGATATTCTTAGAGGATCAGTGTTGAGGGATGAGTACTGTTCTGTGTGTGGACTTCGGGACCTTCCCCAATCGAAAAATACTTGTGTTTGGATAGTCAAGCAAAACACATATGCTGGAAAACACAAAACGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678311.1 True 1116 mRNA 0.44 9 46364129 46374917

Neighbor

gene id symbol gene type direction distance location
LOC103043020 LOC103043020,LOC108411620,LOC108258012,LOC103375802 coding downstream 3303 46352209 ~ 46360826 (-)
LOC103042705 samd15 coding downstream 26588 46329406 ~ 46337541 (-)
LOC103029737 lrfn5b,LOC108411613,LOC108257655,LOC107712211,LOC107564320 coding downstream 35019 46317964 ~ 46329110 (-)
LOC103025714 NA coding downstream 234887 46108572 ~ 46129242 (-)
LOC103025404 NA coding downstream 257960 46078208 ~ 46106169 (-)
LOC103044046 NA coding upstream 12742 46387659 ~ 46395067 (-)
LOC107197829 NA coding upstream 21582 46396499 ~ 46404613 (-)
actr10 actr10,LOC106608088,LOC106571574 coding upstream 35539 46410456 ~ 46416421 (-)
peli2 peli2,LOC103047193,LOC108410474,LOC108258111,LOC100334245,LOC107567396,LOC107574485,LOC106571579 coding upstream 105728 46480645 ~ 46499667 (-)
LOC103047706 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding upstream 137722 46512639 ~ 46514813 (-)
G26663 NA non-coding downstream 2211 46361718 ~ 46361918 (-)
G26605 NA non-coding downstream 202030 46076136 ~ 46162099 (-)
G26612 NA non-coding downstream 296941 46066648 ~ 46067188 (-)
G26564 NA non-coding downstream 514537 45847617 ~ 45849592 (-)
G26563 NA non-coding downstream 519198 45843174 ~ 45844931 (-)
G26666 NA non-coding upstream 21044 46395961 ~ 46409064 (-)
LOC111197648 NA non-coding upstream 203370 46578287 ~ 46599431 (-)
G26751 NA non-coding upstream 287202 46662119 ~ 46663963 (-)
G26771 NA non-coding upstream 730398 47105315 ~ 47106324 (-)
G26783 LOC108424466 non-coding upstream 742665 47117582 ~ 47120006 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 71323 46292087 ~ 46292806 (-)
G26588 NA other downstream 428507 45935153 ~ 45935622 (-)
G26388 NA other downstream 926544 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 1478328 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 1493439 44856099 ~ 44870690 (-)
naa30 naa30,LOC108270341 other upstream 52500 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 143954 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 158778 46533695 ~ 46535835 (-)
G26754 NA other upstream 329430 46704347 ~ 46738736 (-)
LOC103039734 LOC108424428 other upstream 1842589 48217506 ~ 48324662 (-)

Expression


Co-expression Network