mcm9 (mcm9,LOC107549683)


Basic Information

Item Value
gene id mcm9
gene name mcm9,LOC107549683
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48200936 ~ 48219344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678324.1
GGAAACTCTGTTACgcttttgtttatgtattttacgCTCATCAATAAAATCAGATTATGCTTTATTAATCCCAGTTTATtagtgtaataaataataagatttTCAATATTAGCCAGTCACTCTCTGGTTATCTTGCAGGTACAATATGTTGTTGAGTCCGGAACAAGTGACACTCATAAGCCTGGTCTTTGAGACCTATGTGGCAGAGCACCATAAGAGTGACATCCTGCAGATCCTCCAGGAGCCTGATGAAGATGCTCATTATCCGCTGGTGGTGAATGCTATGTCCTTGTTTGAAGCCAACATGGAGGTGGGCGAGTACTTCAATGCTCTCCCCAGTGAGGTGCTGCCTGTTTTTGACAGTGCTCTTCACAAAGCAGCTACGTCCATCTCTCAGACAGAGTCACTGCACAGAGGCCTGAAACCCAAATGCAACATGCATGTACGCATCTCAGGTTTGCCCGTGTGTCCGGAGCTAAGTAGAGACCACATTCCTAAAGCCCGGGATGTGGGCCACTTCCTGTCGGTCACCGGCACGGTCATCCGCACcagcgtaactaaagtactggAGTACGAGAGGGACTACATGTGCAATAAGTGCAGACACGTGTTCTCCGTGCAGGCTGACTTTGAGCAGTTCTACAGCTTCTCCCCTCCCTCTCACTGCCCCAGCGAGGACGAGTGCAACTCCTTCAAATTCACCTGCCTGGCAGACAGTGACGCTGCACCAGCTGCCTGCAAAGACTATCAGGAGATCAAAATACAAGAACAGGTGCAGAGACTGTCTGTGGGCAGTATTCCTCGTTCAATGTTGGTCATTTTAGAAGATGATCTGGTGGACAGGTGCAAATCAGGAGATGATATCACAGTCTATGGTGTTTTGTGGCAGCGCTGGAAGCCTCTGTATCAGGACTCACGCTGTGATGTGGAGATTGTGCTGAAGGCCAACTACATTGAAATTAATAATGATCAGTCTACAGCAGCAGTGGCATTAGAGGACTTTCAAAAGGAATTTGAGGAATTCTGGGAAAATCATAAACAAGACCCTATAGCTGGCAGGAATCAGATTCTGATGAGTCTCTGCCCGCAAGTATTTGGGATGTATGTTGTGAAGTTGGCCGTTGGAATGGTTTTGGCAGGTGGAGTTCAGCGAGTCGATGCTTCAGGAACAAAGGTGAGAGGCGAGTCTCACCTCCTCCTGGTGGGAGACCCGGGCACAGGAAAGTCTCAGTTTCTGAAATACGCAGCCAAAATCACCCCACGCTCAGTCCTCACTGCTGGCATTGGCTCCACAAATGCAGGTTTGACTGTAGCTGCTGTGAAGGACTCTGGAGAGTGGCATCTGGAGGCAGGAGCACTGGTTCTCTCTGACGGTGGACTGTGCTGCATTGACGAGTTTAACAGCATTAAAGAGCATGACCGGACCAGTATACACGAGGCCATGGAGCAGCAGAGCATTAGTGTGGCCAAGGCTGGAATGGTGTGTAAACTGGACACAAGGACCACCATTTTGGCAGCCACTAACCCAAAGGGCCCGTACGACCCCAATGTGTCCGTCTCTGTGAATGTAGCTGTGGCTAGCCCCCTTCTCAGCCGCTTTGACCTAGTTTTGGTCCTGCTAGACACCAAGAATCCAGAGTGGGACAAGATCATTTCTTCCTTCATCCTTCAGAACAAAGGTGCTCCCAGTCAGTCTTCATCATTATGGAGTATGGAGAAGATGAGGGCCTATTTCTGTGTGATAAAGAGGCTGCGACCAAACATCACTCAGGAGGCTAACTCTATCCTGGCCCGCTACTACCAGCTGCAGAGACAGAACGACAGCCGCAGCGCAGCGCGCACCACTATACGCATGCTGGAGAGCCTCGGCCGTCTCGCAGAggCTCATGCCAGGCTGATGTTCAGGGAAATAGTCACAGTGGAAGATGCTGTTGTGGCGGTGTCTGTTATGGAGTGTTCTATGCAGGGGGGTGCACTACTTGGCAATGTGAATACACTGCACACCTCCTTCCCTGACAACCCAAGAGAGCAGTATAGAACACAGTGTCAGGTTGTGCTGGAGGGCCTGGGTTTGACCCACATCCTCGACAAAGAGCTTCAGCGGCTCTCCAGTGCACATGACTCTGGGTCTGGAGTGGAGCAACAGAGTGACACACATGTGCACAGCATGGACAGTGAGCTGACCCCTGTATCTGACCCAGGCCTCGACTGGTTCCATGGTTTATCCAGCCCAAATACGTCAAACAGCACTTTCCCCCCAGTGTCTCCAGTCATTACAGCCGCACAGAACCCTGCCAAACCACAGAGCCCTACCGAGTTGCCTAGCAACAGCAGCTCGGCACATGGCGAGCGTTCTGCGTGGGAGAAGGAGGCTGGTGGGGCCGTGGAGGCGGCAGCGGCGGCTGACTCAGGCAGGGATACGGAGGGGGCTGAGAGAAGGCCCAGTTCTGTGCTGGAGAAAAGCTCCAAAAAGCTACGGGCAAAACGATTGAGAGGGATGAGCAGGGAACCCCtgcagagagaagaggagacGGCTGAGGATGGGAGGACAGACGCTGGTGATGATCTGGAGCAGATGTTTTATCCGGACAGGTTTCCCTCCCACAGCATGCCTGTGGCAGGCAAAAAGCAGCCCTCCAAAAGAAAAGCTCCTTCACTCGATGTTCCTGTGATTGAGCTGCAATCCACTGACAAAGCAGAGAGTGGGGAAGACCTACGCAGCAAACTGTCCTGCTTTACCTTCAGACCTCGAGAAAGAATGGAGCATGCAAATCAGATCGGTTGCGCTACCAGTGCTAACAATGAAACGCTTCCCACAGTGGATAAAGGCGAGAGAAGTAAAAGTGGCACAGAAGCAAAACATCCTACAGAACAGAAAAATCTAAAGAAAGTGCAGGAGAGTGAACATTGTGATTTTTCCAAGCAGCCAGCAGAGGGCAGCAGTGCAAGCAAGAAGCTCCGCCAGCGAGTTGAAGCCGAGGTCAGGGAGCTTCCGTCTGAGGAGTTAAGTAGAGAGGAAAGTGGAGGAAGTAAAAATGTGGAGCACAAGCATCAGCAGCTTCTACAAAAACTCTCTGGTTTAACCTCAGGTGCTGTTAAATCTGTCCCCTCCATTCCTCCCCAAGCTCCCAGTCCCCCAACAATTCACAAAGTTGCTTCCTCCACCCTGGCCAAACTTTCCAGGTTCTCTTTCATTTCATCTGAGGAGAAAAGCCAAGAAAAGTCCTCCACAGCTTCAACAGGACAAAAGCCAAAAGCCTCACCAGTTTCCGAGGACAGCGTAATGGAAAAGGCTTCCAGCACAGCGGAAAGCAAACAGTCTGACACTGCAGTGACGACTGTGGAGGACAGAAAGCAGCAGAAAAACACCAACCCCCAGCCCATAATGAACTCAGCTACAGGGAGTGCAGAAAAATCTGCTAGGCCACACACAGCCGGCACAAAGACCGGGGATTGTGGTGCAGCTCCGGCAGTTGGGGAGCAGTTAGTGATCCCCAAAAAGAGGAAGTGTTTTGATTTAGGCTCAGCAGGACCCGCAGGCCCTTTTTCTGGCTTTTCATTCTTTAGCTCCTCTATCGCAGACGACGAGGAGCTCAATGTGGACTGGGAGGAAGAGTCTGGCAAAAGATAGAATGTGGAATTAAGAAATGTGAATTTGTAG

Function

symbol description
mcm9 Predicted to enable single-stranded DNA binding activity. Predicted to contribute to single-stranded DNA helicase activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA duplex unwinding and DNA repair. Predicted to be part of MCM8-MCM9 complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in ovarian dysgenesis 4. Orthologous to human MCM9 (minichromosome maintenance 9 homologous recombination repair factor).

NR:

description
DNA helicase MCM9-like

GO: NA

KEGG:

id description
K10738 MCM9; DNA helicase MCM9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678324.1 True 3661 mRNA 0.51 12 48200936 48219344

Neighbor

gene id symbol gene type direction distance location
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 4397 47940437 ~ 48196539 (+)
LOC103032605 NA coding upstream 274534 47918346 ~ 47926402 (+)
man1a1 man1a1,LOC107727625 coding upstream 610520 47393247 ~ 47590416 (+)
tbc1d32 tbc1d32,LOC107602184,LOC107675228,LOC107727650 coding upstream 1000728 47139549 ~ 47200208 (+)
LOC103044458 LOC108424466 coding upstream 1081922 47115452 ~ 47119014 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding downstream 12926 48232270 ~ 48311540 (+)
amd1 amd1 coding downstream 322191 48541535 ~ 48565601 (+)
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding downstream 401386 48620730 ~ 48621912 (+)
LOC103035465 NA coding downstream 430344 48649688 ~ 48654677 (+)
LOC103035149 NA coding downstream 452743 48672087 ~ 48679878 (+)
G26890 NA non-coding upstream 268985 47908691 ~ 47931951 (+)
G26872 NA non-coding upstream 448070 47752634 ~ 47752866 (+)
G26867 NA non-coding upstream 503356 47697342 ~ 47697580 (+)
G26864 NA non-coding upstream 518695 47681924 ~ 47682241 (+)
G26862 NA non-coding upstream 519224 47681193 ~ 47681712 (+)
G26982 NA non-coding downstream 199488 48418832 ~ 48450456 (+)
G26993 NA non-coding downstream 332889 48552233 ~ 48552667 (+)
G26994 NA non-coding downstream 333505 48552849 ~ 48553157 (+)
G26996 NA non-coding downstream 343260 48562604 ~ 48567294 (+)
G27008 NA non-coding downstream 415100 48634444 ~ 48634842 (+)
fau fau,LOC108411505,LOC107704371 other upstream 1651383 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 4706620 43490323 ~ 43494316 (+)
G25880 NA other upstream 4776030 43424392 ~ 43424906 (+)
G25879 NA other upstream 4778890 43421771 ~ 43422046 (+)
rps29 NA other upstream 4837492 43360469 ~ 43363444 (+)
G26915 NA other downstream 58923 48278267 ~ 48315894 (+)
G26995 NA other downstream 336453 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 359459 48578803 ~ 48618075 (+)
G27075 NA other downstream 521870 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 1228501 49447845 ~ 49448221 (+)

Expression


Co-expression Network