LOC111194359 (LOC108441310,LOC108412179,LOC108441308)


Basic Information

Item Value
gene id LOC111194359
gene name LOC108441310,LOC108412179,LOC108441308
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48620730 ~ 48621912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678336.1
atgggGATCAGGAAGGGGGTCTACAGCTGCCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTACGCAGAAACAACATGCTGGCTGAAGTGGTGGAGAAACTGAAGAAGACAGAAGTCCGAGCTGCTTCTCCTGCTCACTGTTACGCTGGAGCTGGAGATGTGGAGTGTGATTTCTGTACTGGGAGAAAACTCAAAGCCATCAAGTCCTGTTTGGTGTGTGTAGCGTCTCTCTGTGAAACTCATCTTAAACCTCACCTGGAAATTCCAGCCTTGATGAAGCACAAGCTGGTGAAAGCGTCCACACGACTACAGGAGAAGATCTGCTCTCAGCATGATGAAGTGATCGAGATCTACTGTCGCACTGATCAGCAGTTAATCTGTTATCTGTGTACGATGCATGAACACAAAGGACATGATACAGTTGCAGCTGCAGCAGAAAGAACTGAGAAACAGGTGAGATTCTGATA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678336.1 True 473 mRNA 0.49 2 48620730 48621912

Neighbor

gene id symbol gene type direction distance location
amd1 amd1 coding upstream 55129 48541535 ~ 48565601 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding upstream 309190 48232270 ~ 48311540 (+)
mcm9 mcm9,LOC107549683 coding upstream 401386 48200936 ~ 48219344 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 424191 47940437 ~ 48196539 (+)
LOC103032605 NA coding upstream 694328 47918346 ~ 47926402 (+)
LOC103035465 NA coding downstream 27776 48649688 ~ 48654677 (+)
LOC103035149 NA coding downstream 50175 48672087 ~ 48679878 (+)
LOC103034613 NA coding downstream 68212 48690124 ~ 48694492 (+)
LOC103042815 NA coding downstream 77701 48699613 ~ 48707949 (+)
ginm1 ginm1 coding downstream 89661 48711573 ~ 48722910 (+)
G26996 NA non-coding upstream 53436 48562604 ~ 48567294 (+)
G26994 NA non-coding upstream 67573 48552849 ~ 48553157 (+)
G26993 NA non-coding upstream 68063 48552233 ~ 48552667 (+)
G26982 NA non-coding upstream 170274 48418832 ~ 48450456 (+)
G26910 NA non-coding upstream 407748 48212137 ~ 48212982 (+)
G27008 NA non-coding downstream 12532 48634444 ~ 48634842 (+)
LOC111188407 NA non-coding downstream 42743 48664655 ~ 48668564 (+)
G27072 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 non-coding downstream 101419 48723331 ~ 48735530 (+)
G27099 NA non-coding downstream 143577 48765489 ~ 48765945 (+)
G27130 NA non-coding downstream 232600 48854512 ~ 48874216 (+)
LOC103035773 NA other upstream 2655 48578803 ~ 48618075 (+)
G26915 NA other upstream 304836 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 2071177 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 5126414 43490323 ~ 43494316 (+)
G25880 NA other upstream 5195824 43424392 ~ 43424906 (+)
G27075 NA other downstream 119302 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 825933 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 1717652 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 2122971 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 2147951 50769863 ~ 50772162 (+)

Expression


Co-expression Network