ddhd1


Basic Information

Item Value
gene id ddhd1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52382945 ~ 52400818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678348.1
ATGAGCGGGTTTAAGGAGCCGTGCgtgcaggaggaggaggctgAGGAGGGCAGGGCGGGCTGGGGGAACCATGTGGGGCTTCAGGAGGGACTGCTGCTGGGCCTCATGGGAGAATCATACCAGGACTACCAGAGCTCCAATCCAGACTACCAGGGCTCCAGCACGGGCTATCAGCCAGGTTACCAAGGCTCAGAACCAGGCACCGATTATCTGGACGTGTTGGGCTATGGACCCAGGCGCAGCCGGGCCGGTAGCTCCCGGCACCGGGGGGAGGTGGTGACGGAGCTGGGGCCAGAGGAGGTGCGCTGGTTCTACAAGGAGGACAAACGCACCTGGAAGCCATTTGTGGGTCACGACTCTCTGCAGATCGAGCTCACCTACCGCAAGCTGTGTGAGCTCAACCCAGGAAAAGCCAGCGAGCAGGACGAATGGGAGGAGCTGGGGGGCTCAGGGGGAGACTCTGAGGGAGTGGAGGGACAGAAGGGGCAGACGGAGGCTTCGGTCAGCAAAGAAGTGGCAGGTCCAGCTGAGGAGATAGACGTGGACTCAATAGACATTGGTGTGGAGGCAGTGTGTGTCAGAGGGGGGCTGTATGAGGTGGACGTCAAGGAGAAGGAGAGTTACCCGGTCTACTGGAAccAGCAGGAGCGAATCCCTGTGATGCGTGGTCAGTGGTTCACTGACGGAACGTGGCTGCCACTCGAGGAAGAGGACAGTGACCTGATAGAACTGGAACACCTATCTTGTTTTCGTGGACACCAGATGAAGGATACATTTGAAACGGAGGCAGTAACCACAGCAGTGGACAGCAAGGATGCCATCCACAGTCTAAAGCTTAGCCGCAGTCATGTGGACTGGCACAGTGTTGACGAGGTGTACCTGTACAGTGATGCCACCACCTCCAAAATTGCACGTACTGTCACTCAAAAACTCGGCTTCTCAAAAGcttcCAGCAGTGGGACTCGCCTACATCGAGGCTATGTTGAGGAGGCAGCACCTGAGGACACGCCTCCTGCAGCTACACACATTGTGTTTGTGGTGCACGGGATAGGTCAGAAGATGGATCAGGGCCGGATCATCAGAAACACCAGCATgaTGCGTGACGCTGCGAGGAAGATGGAAGAGAAGCACTTCTCAGACAGAACTACAGAGCATGTAGAGTTTCTCCCTGTGGAGTGGAGATCTAAACTCTCTCTGGATGGAGACACTGTGGACTCCATCACGCCAGATAAAGTGCGTGGGCTGAGAGACATGCTGAACAGCAGCGccatggacatcatgtattacACCAGCCCACTCTACAGGGACGAGATCACGCGTGGGCTGACCAAAGAGCTGAACCGGCTCTATACACTCTTCTGCTCTCGGAACCCTGAGTTTGAGGAGAAGGGGAAAGTGTCCATCGTTTCTCACTCTTTGGGCTGCGTCATCACCTTTGACATCATGACCGGATGGGACCCTGTTCGCTTTCATCATCAGGAAGCTCCTGATGCCATGGAAACGGAGCAGCGACGCCGGGGGTGTGAAGAGCAGCGGCTGTTGGAAGAGCTTCACCTCACCCGCATGAGATTAAGGGATTTGGAGGATCAATTTCAAGGCCTGAAGATGTCTTCCTCAAGAACTTCCCCACCCTTAAAATTTAAGGTGGAGAACTTTTTCTGCATGGGTTCACCGCTGGCTGTGTTCTTGGCTTTAAGGGGAATCCGGCCCGGTAACAATGGAACCCAGGACCACATTCTGCCCCGTTCCATCTGCCAGCGGCTCTTAAACATCTTCCATCCCACTGATCCTGTGGCATACAGACTGGAGCCTCTGATCCTAAAGCACTATAGTAACATTTCTCCAGTTCAGATACACTGGTACAATACCAGTAGTCCCACTCCATATGATCAGATCCGGCCCACGCTGCTGAACCCGCTGAAGGAGAGCGTCTCAGTGTCGGACAGTGAGAGTCTCCCAAGCCCTTGCACGTCGCCCCCGCAGAACCGCAGGCACTACGGAGAGTCCATCACCAACCTGGGCAAAGCCAGCATTATGGGAGCGGCGAGTATTGGTAAGGGCATTGGAGGAATCTTTTTCTCCCGCTTTTCCCGTTCAAGCGGGCAGGTGGGTGGAACCGAGGAGGAACCATCAGACTCAGAGGGAGGAATATGTGAGACAGAGGGTGCGGCTATTGCGGAGGAGGGCGGGGTTGCAGAAGCCGAAGAAAAGATGGAGGACAAGGTGGAGGACAAGAGAGAAGGAAGCGCTGGCTGCATGTCTCAGTCAACTTCCACCATTATGGACAACTCCACCTTTGAGCTGGACAGACGTATTGACTTTGAGCTGAGGGAGGGACTGGTGGAGAGCCGCTACTGGTCAGCGGTGACCTCACACACGGCCTACTGGTGTTCTCACGACATCGCTCTGTTCCTGCTCACGTTCATGTATGGGCCCAACACTCCCAACGAGACCACAGAGGACAACCTGGATTCGtaacaaacactacacacacacacacacatgcacacgcgcacacactcacatacatgTGCATGCACACTGCTTGTCAGAGGTGTTGTGAAATCACAACAAAGCAGTTAAAAATGGCCTTTTGCTTTATCTAAGAAGTCACAAATtaccattttaaataaatcatcTAGAGCTAAAAGTTTTAACTTCTCAAATTGTGTTTGCTCTATAAACAAATTGCCCAAACTGCAATAAATTTCATCAAGGCTTTGGAAGAAACAATGTTAATATATATGGAAAATGTGTaaagtgtataaatgtataaaaaagaaatctaatTATAGCTGATTTAATGAAATTCATGCAAGACAGACAAAAAGAAGTCACTGATATGAAGCTCtttaaatgatcaaatataaagaaatcaCCATGTTGTAACTTTTTACATCACTAGACTGcattaaatccttctcaaaaaagtttttttttttttttttttttttttagttgtttttatgtCAGCAAAGAATAGAGAAGATTCAGCTTCACATGTGTGCAGTGTGCAGGCAGCAAACATACAAATAGCAACATACTTGGAGTTTAATCAGTTACTGTAAAATGCTCTGAATGGACCCCCACCAATATGGTGATTAGAGTAAATATCATACATACAGTagagaaaaaaaggtttaatatGGTTAGCATGCTTAATATGGTACCTATAACCCACTATACAGTAGAAAACTGTAACATATGGTAGGGTTTAATATGGTAAATATGgtattataaacaaataaagaaagcaCACATGATTTGAAAAGCTTTGTTGTCTCCAGGCTTTTGACAGGCAGTGTATGTACACTCCccaatgcacacatacacacattaacacacaataaacatgCACTTACAGTAGAAGCTATATAGATTAATAGACCCAGTTCACTGTGCAGAGAGAGACACTGTCCACTTCCCTTTGCCTTGTCCATTGGTGAACACTTCGAATTGCCTCCGTCACTCTGAAGCTTGGTCTCTGGCCAGTGGTCCTGACTGTTCTTTAAGAAGCACCTCTGATTGCAGCCTCTTAGTGGTGGTCACTCGGTCATGCCTTGTTTACTGTTCTTGTTTCCCATTTTTCACTGTTGTAGCACTAGGAAACTCATTGTCtgccaaaaaaaatatgttatttgaTATTCATAGTTCATGTTTACTACATTAATAT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K13619 DDHD1; phospholipase DDHD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678348.1 True 3673 mRNA 0.49 14 52382945 52400818

Neighbor

gene id symbol gene type direction distance location
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding upstream 8798 52367883 ~ 52374147 (+)
LOC103029411 NA coding upstream 55143 52321992 ~ 52327802 (+)
tmx3 tmx3 coding upstream 687928 51586207 ~ 51695017 (+)
dnajc13 dnajc13 coding upstream 798848 51503220 ~ 51584097 (+)
rngtt rngtt coding upstream 1160872 51192823 ~ 51222073 (+)
LOC103030894 NA coding downstream 3064 52403882 ~ 52412080 (+)
trnac-gca_8 NA coding downstream 67954 52468772 ~ 52468843 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 174120 52574938 ~ 52609821 (+)
LOC111188745 NA coding downstream 368424 52769242 ~ 52781864 (+)
LOC103033541 LOC108413844,LOC108417958 coding downstream 384841 52785659 ~ 52789369 (+)
G27716 NA non-coding upstream 1940 52379856 ~ 52381005 (+)
LOC111188740 NA non-coding upstream 18773 52362005 ~ 52364172 (+)
G27701 NA non-coding upstream 34689 52342948 ~ 52348256 (+)
G27684 NA non-coding upstream 67450 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 69711 52313035 ~ 52313234 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding downstream 127910 52528728 ~ 52531000 (+)
G27772 NA non-coding downstream 203128 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding downstream 266517 52667335 ~ 52672114 (+)
G27834 NA non-coding downstream 503502 52904320 ~ 52904678 (+)
G27849 NA non-coding downstream 628991 53029809 ~ 53030010 (+)
G27683 LOC108412685 other upstream 68679 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 292312 52083282 ~ 52090633 (+)
G27489 NA other upstream 1204571 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1610783 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1628984 50744883 ~ 50753961 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 53613 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 359295 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1222005 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1222364 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1222631 53623449 ~ 53623521 (+)

Expression


Co-expression Network