med23 (med23)


Basic Information

Item Value
gene id med23
gene name med23
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53689367 ~ 53715908 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678355.1
GAGGGGGGATTGTTATTGAAGCTGCGCGGCGGCTCCGCTGTAGGAGGAGCGGCTGATCATGTATCTAAAGCAGAAATTAAACTAAGTGTAAAATATTCCGGCGCTTTTTCCACGCTGTGAGGGTTAAACCATGGCGGTCCCGATGGAGAGTCAGCTGCAGAGTATCTTTGAGGACGTGGTGAAAACAGAAGTAATTGAGGAGGCTTTCGCTGGGATGTTTATGGACACCCCTGAAGATGAAAGAACCAAACTTATCAGCTGTTTAGGAGCATTCAGGCAATACTGGAGCAGTCTTCCTGAGGAGTCCCATGAGCAGTGTGTGCAGTGGATCGTGAGGTTTATCCACAGCCAGCACAGTCCAAAACGCATCTCCTTCCTCTATGACTGCTTGGCCATGGCGGTGGAGACCAGTCTGCTGCCCCCCAGaATGGTCTGCCAGGCTCTGATCAACTCTGATTCTCTGGAGTGGGAACGCACACAACTCTGGGCTTTGACCTTTAAACTCATTCGCAAAATCATCGGTGGAGTTGATTATAAGGGTGTGAGAGACCTTCTGAAGGCTGTTCTGGATAAAGTTCAGACCATCCCCAACCTGGTCAGCTCGGCTGTAGTGCATCAGCTGCTGCCTGTGCGAGAGgTGGTGGAGTACATCCTGGACAGGAATGCTTGTCTCCTTCCAGCTTATTTTGCTGTGAATGAAATCCGGAAACTCTACCCAGAGGGACAGCTCTCACACTGGCTTTTGGGCGGCTTGATATCAGACTTTGTGGACAGCTTCCGGCCAACTGCAAGAATAAACTCCATTTGTGgTCGCTGTAGTCTCCTCCCTGTGGTGAATAACTCTGGAGCGATCTGTAACTCATGGAAGCTGGATCCAGCCACCCTGCGCTTCCCTCTGAAAGGCATGTTGCCCTATGATAAGGACCTGTTTGAGCCCCAGACCGGGTTGCTTAGATATGTTTTGGAGCAGCCTTACTCCAGAGATATGGTCTGCAACATGCTTGGCCTTAACAAACAGACCCTGAACATTGCTCAGCATAAGCAGCGCTGCACCGTGCTGGAGGACCAGCTGGTGGACCTGGTGGTTTACGCCATGGAGCGTTCGGAGACTGAGGAGCAGTTTGATGATGGTGGAACCAGCCAGCTGCTGTGGCAACATCTATCCAGCCAGCTCATCTTCTTCGTCCTCTTTCAGTTTGCCAGCTTCCCACACATGGTGCTGTCCCTGCATCAGAAGCTGGCTGGTCGTGGTCTGATTAAAGGTAGAGATCACTTAATGTGGGTGCTGCTGCAGTTTATCTCTGGAAGCATCCAGAAAAATGCGTTGGGTGACTTCCTGCCAGTCATGAAGCTCTTTGACCTGCTTTACCCAGAGAAAGAGTGTATTCCAGTTTCAGACATCAACAAACCCCAGTCTACCCACGCCTTCGCCATGACCTGCATTTGGATCCACCTGAACCGCAAAGCCCAGAATGACAACTCCAAACTACAGATTCCTATTCCGCACTCGCTCAAACTGCACCATGAGTTTCTGCAGCAGAGTTTACGCAACAAGAGCCTGCCGATGACCGACTATAAGATTGCGCTGCTGTGTAACGCTTACTCCACCAACTCCGAGTGCTTCACTCTACCCATGGGTGTGCTGGTGGAGACCATCTATGGTAACGGTACACAGCGCATCTCTCTGCCGGGAACCAACTGCATAGCATGTGGCTCGGTCACGCCCCTGCCCATGAACCTGCTCGATTCTCTCACCGTTCACGCCAAAATGAGTCTCATCCACAGTATAGCCACTCGGGTCATTAAACTGGCCCATGCCAAGTCTAGTGTTGCCCTGGCCCCTGCCCTGGTGGAGACGTACAGCCGCCTGCTGGTCTACATGGAGATTGAATCTCTTGGAATCAAAGGCTTCATCAGTCAGCTGTTACCGAACGTGTTTAAGTGTCATGCGTGGGGGATTCTGCACACTCTGCTGGAGATGTTCAGTTACCGGATGCACCACATCCAGCCGCACTACCGTGTTCAGCTCCTCTCTCACCTCCACTCACTCGCTGCTGTACCGCAGACCAATCAGAACCAGCTGCACCTTTGtgtggaGAGCACAGCTCTCAGGTTAATCACAGCATTGGGAAGTTCAGAAGTCCAACCACAGTTCACGCGTTTTCTCAGTGACCCCAAGACAGTGCTTTCTGCAGAATCTGAGGAGCTGAACCGAGCACTGATCCTTACTCTTGCCCGTGCCACACACATCACTGATTTCTTCACAGGGTCAGACTCCATCCAGGGTACATGGTGTAAGGACATTCTGCAGACCATCATGAACTTCACCCCTCATAACTGGGCCTCTCACACGTTGAGCTGCTTCCCGGCTCCTTTACAGGCGTTCTTTAAGCAGAATAATGTTCCTCAGGAGAGCCGCTTCAACCTGAAGAAGAATGTAGAAGAAGAATACAGGAAGTGGAAGTCCATGACCAACGAGAATGACATCATCACACACTTCTCGATGCAGGGTTCTCCACCTCTCTTCCTCTGCCTGCTGTGGAAAATGCTTCTAGAAACCGACCACATCAACCAGATTGGCTTTAGGGTTCTGGAAAGGATTGGTGCGCGTGCACTGGTGGCCCACGTGCGGACGTTTGCTGATTTTCTCGTGTATGAGTTTTCCACGTCAGCAGGGGGACAGCAGTTAAACAAGTGCATAGAGATCTTGAACGACATGGTGTGGAAATACAACATTGTCACTCTGGACCGACTAATCCTGTGTCTGGCAATGAGGAGTCATGAGGGGAATGAAGCACAAGTTTGCTACTTCATCATCCAGCTTCTCCTCCTCAAGCCCAACGATTTCCGCAACCGTGTCAGTGACTTCGTCAAGGAGAACGCTCCAGAACACTGGCTACAGAGTGACTGGCACAACAAGCACATGTCCTACCACAAGAAATACCCAGAAAAGCTGTACTTTGAGGGTCTGGCTGAGCAGGTGAATCCCCCCATGCAGCTTCAGCCACAGTACTTGCCCATCTACTTTGGTAATGTGTGTCTGCGCTTCCTGCCTGTCTTTGACATCGTCATCCACCGTTTCCTGGAGCTGCTGCCTGTCTCAAAATCCCTGGAGACGCTGTTGGACCACCTAGGCGGGCTCTACAAGTTCCATGatcgGCCGGTGACGTACCTCTATAACACCCTGCACTACTATGAGAGGCACCTGCGTGACCGCACCAATCTGAAGCGCAAGCTGGTACACGCCATCATGAGCTCACTGAAGGACAACCGCACACCTGGCTGGTGCCTCAGCGAGACCTACCTCAAGTTTGGAATGAACCCCCGGGACGACAATGTCTGGATCCCAGACGACACCTACTACTGCAAACTCATCGGCCGCCTGGTTGACACGATGGCTGGAAAGTCTCCAGGTCCTTTCCCCAACTGTGACTGGCGCTTTAATGAGTTTCCGAACCCAGCGGCACACGCGCTTCACGTGACCTGCGTTGAGCTGATGGCTCTTGCTGTGCCGGGGAAAGATGTGGGAAACGCACTGCTAAACGTTGTGCTCAAGAGGTCGGAGCTCCACCActgcaatGAACCGTACTGGATTGTGCTGCATGATCGCCTTGTGAGCGTTATCAGCAGCCCAGTGTTGACGTCGGAGATGGACTGTGTTGCGGTACCATTCCAGCTGCTGGACTTCACCGCCTGCCACCAGTCCTACTCTGAGATGTACTGCAGCTACGTGCTAGCACTAGCCCATGCAGTCTGGCACCACTCCAGCATTGGACAGCTCTCCCTCATTCCAAAGTGTTTAAGATGTACCTGCTCTGTTTTGCAGGAACCGTACTGGATTGTGCTGCATGATCGCCTTGTGAGCGTTATCAGCAGCCCAGTGTTGACGTCGGAGATGGACTGTGTTGGGTACCCATTCCAGCTGCTGGACTTCACCGCCTGCCACCAGTCCTACTCTGAGATGTACTGCAGCTACGTGCTAGCACTAGCCCACGCAGTCTGGCACCACTCCAGCATTGGACAGCTCTCCCTCATTCCAAAGTTTCTGTCCGAGGTTCTAAAGCCACTGGTGAAGACTGAGTTCCAACTCCTCTACATCTACCACCTGGTGGGGCCGTTTCTGCAGCGCTTCCAGCAGGAGAGAACACGCTGCATGCTGGAGATTGGAGTGGCTTTCTATGAGATGCTGCAAGCTGTGGACCACCACAGTAAGCACCTGGCATATATGGACCCCATCTGTGATTTTCTCTACCACATGAAATACATGTTTACAGGGGACAGCGTCAAAGACCAGGTGGAGAAGATTATCTGCACATTAAGGCCGGCCATGAAGCTCCGCCTTCGTTTTATCAGCAAGATGGAGCCAGCTGCAGCTGTTGCTACAGCAACCTCCTCCTCCCAGCCAACCATGGTCTCCTCACCTGCCCCTCAGAGTGGACCTGGACCCGTCCAGTGACTCTGCAAATGACCATGTCCCCGGTGGACCCTCACTGTGTTGTTGTCTGATCTATACAGGCTCCTCCCATaaatgtgttctttcatagCTACTGAGGTTGGACAGGCTTTACACAATGTTGATATACAAattgatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaacta

Function

symbol description
med23 Acts upstream of or within circulatory system development; negative regulation of neurogenesis; and pigmentation. Predicted to be located in nucleus. Predicted to be part of mediator complex and transcription regulator complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human MED23 (mediator complex subunit 23).

NR:

description
mediator of RNA polymerase II transcription subunit 23 isoform X4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15166 MED23; mediator of RNA polymerase II transcription subunit 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678355.1 True 4665 mRNA 0.52 30 53689367 53715908

Neighbor

gene id symbol gene type direction distance location
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 279298 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 923523 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 972300 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 1047783 52640295 ~ 52641584 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 1135095 52525768 ~ 52554272 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 447194 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 752109 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 926107 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 939496 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 979275 54695183 ~ 54732688 (-)
G27960 NA non-coding downstream 26215 53662814 ~ 53663152 (-)
G27958 NA non-coding downstream 27452 53661543 ~ 53661915 (-)
G27956 NA non-coding downstream 29230 53659876 ~ 53660137 (-)
G27947 NA non-coding downstream 49310 53639799 ~ 53640057 (-)
G27922 NA non-coding downstream 126347 53562599 ~ 53563020 (-)
G28074 NA non-coding upstream 77310 53793218 ~ 53838213 (-)
G28082 NA non-coding upstream 114565 53830473 ~ 53833244 (-)
G28075 NA non-coding upstream 150147 53866055 ~ 53943260 (-)
G28093 NA non-coding upstream 162210 53878118 ~ 53881179 (-)
G28098 NA non-coding upstream 175190 53891098 ~ 54247479 (-)
trnal-cag NA other downstream 67009 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 839461 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1367447 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 2948933 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 3149695 50522899 ~ 50539672 (-)
akap7 NA other upstream 26972 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 333887 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 840980 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1550183 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 1716173 55432081 ~ 55444669 (-)

Expression


Co-expression Network