LOC111194387


Basic Information

Item Value
gene id LOC111194387
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67097963 ~ 67100303 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678459.1
cctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcaccaccaccaccctcacctccaccatcttcatcagcaccatcatcaccctcacctccaccatcttcatcatcaccaccatcaacacTATCAACTGGCAGACAAATCATCTCCTCCAGTCCACCAACCTTTACTGCTGACCAGGTCAGGAGACAGCTGAGGAGACTTCACCCCAGGAAGGCAGCTGGCCCGGACAGAGTGTGCCCCAGAATGCTCAAGGCATGTGCTGTTCAACTGGGTGAGCCCCTCCAACATGTTTTTAACCTCAGTCTGCGTCTAGGGAGAGTTCCTGCCACGTGGAAGACAACCTGTCTCATTCCTGTTCCCAAGAAGGCACACCCGAAGGagctgaatgactacaggcctgttgctttgacatctcatgtgatgaagaccatggagcgactgctgctggaccaactcagctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678459.1 True 1830 mRNA 0.57 2 67097963 67100303

Neighbor

gene id symbol gene type direction distance location
LOC111191093 LOC103025937 coding upstream 1049 67095898 ~ 67096914 (+)
LOC103023947 impg1,LOC107660503 coding upstream 238068 66801591 ~ 66859895 (+)
htr1b LOC108427470 coding upstream 413641 66681122 ~ 66684322 (+)
LOC103022286 snx14,LOC108427503,LOC108279824 coding upstream 709749 66349351 ~ 66388214 (+)
cnr1 cnr1,LOC104936193 coding upstream 756006 66336429 ~ 66341957 (+)
LOC103025937 LOC103025937 coding downstream 12893 67113196 ~ 67116181 (+)
LOC111194388 NA coding downstream 92925 67193228 ~ 67194052 (+)
LOC111194389 NA coding downstream 95213 67195516 ~ 67196427 (+)
LOC103028999 NA coding downstream 415629 67515932 ~ 67528356 (+)
swt1 NA coding downstream 433512 67533815 ~ 67579081 (+)
G31234 NA non-coding upstream 138381 66821189 ~ 66959582 (+)
G31244 NA non-coding upstream 180194 66892429 ~ 66917769 (+)
G31192 NA non-coding upstream 515397 66581802 ~ 66582566 (+)
G31181 NA non-coding upstream 643772 66453502 ~ 66454191 (+)
G31161 NA non-coding upstream 651559 66446161 ~ 66446404 (+)
G31278 NA non-coding downstream 69 67100372 ~ 67103483 (+)
G31370 NA non-coding downstream 250492 67350795 ~ 67354687 (+)
G31410 NA non-coding downstream 382290 67482593 ~ 67517034 (+)
G31406 NA non-coding downstream 389334 67489637 ~ 67579907 (+)
G31479 NA non-coding downstream 553846 67654149 ~ 67654605 (+)
G31000 NA other upstream 1260598 65828781 ~ 65837365 (+)
trnad-guc_10 NA other upstream 1998601 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 1999390 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 2011183 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 2050985 65022419 ~ 65046978 (+)
G31355 NA other downstream 114002 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 383032 67483335 ~ 67506898 (+)
G31407 NA other downstream 396900 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 591138 67691441 ~ 67844634 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 919737 68020040 ~ 68022940 (+)

Expression


Co-expression Network