LOC111194389


Basic Information

Item Value
gene id LOC111194389
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67195516 ~ 67196427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678468.1
ATGGAATTGAGCATTTTGTTTGGATTGAATTTGCCTTGTGCATTGATGGGTCTCCTGATGAACACGTTTTACATGTTCTGCTTGATATTCCCCTTGGGTGGTAAGATCAGACAGCCTCTGATGACCCTCCTGGTGCTAATGATCGCCTCCACCAGTGGATTTCAGCTCAGCCTGATTGCCTATCTTGCCCTGGAACTCACACCTAGGATGTGGGATGTCAAGCAAGCCATGAGAATATTCCTCTTTTACATGATCCGGACCAGCATTCCTGGCAGcttatttctttacattttctaCTGCATTCAGATTGTTCCAGTCACAAAGGCACCTTTCATCTGGCTCAAAAAGAACATCAAAACTGTTGTGCATGCTTTTCTCATATTTGTCAAGATCTACTTCATAGTGTACTTTGCACTGGAACTCTTTACATCATTTGGCTTTTCTACTCAAATTTTTGAATTCAACAACACTACTATGAATATCTCATATACCTTCACCACTGATACATCTGCGGCCCATATGTTACTTGGAACAATGGACATATTGACAACAGCGATGGTTTTTCAGAGCTCAGTTGTGATGCTGGCAGTCACCACTGTCACAGGACATTACCTGTACCAGCACGTTAAGAAGATGACCAGCAGCGGGATGCCCTTTAACTCTCAGGCTCTCCAGAACCAAGTCAGAGTGATCATTACCAGCTTCATACAAGGATTCCTCTACCTCTTCTGCTCAACTGtaatatgtgtatatttgtttttcacTGACAAAAACTTTGATTGGGCTGTCTTCTGGATGATCTTTAATCTCTACTTACTGGCCACCACCACCAACCTGGGAGTGGGTCAGTCTCTGTTCAGGCAGCGGGCCGCTGAGTTGTGCCGAAGAGCGGGACACCTACCTTCTACCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678468.1 True 912 mRNA 0.44 1 67195516 67196427

Neighbor

gene id symbol gene type direction distance location
LOC111194388 NA coding upstream 1464 67193228 ~ 67194052 (+)
LOC103025937 LOC103025937 coding upstream 79335 67113196 ~ 67116181 (+)
LOC111194387 NA coding upstream 95213 67097963 ~ 67100303 (+)
LOC111191093 LOC103025937 coding upstream 98602 67095898 ~ 67096914 (+)
LOC103023947 impg1,LOC107660503 coding upstream 335621 66801591 ~ 66859895 (+)
LOC103028999 NA coding downstream 319505 67515932 ~ 67528356 (+)
swt1 NA coding downstream 337388 67533815 ~ 67579081 (+)
LOC103045824 LOC108256302,LOC108439581 coding downstream 682113 67878540 ~ 67929915 (+)
LOC103035042 LOC108439590 coding downstream 807807 68004234 ~ 68018991 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding downstream 827510 68023937 ~ 68042368 (+)
G31278 NA non-coding upstream 92033 67100372 ~ 67103483 (+)
G31234 NA non-coding upstream 235934 66821189 ~ 66959582 (+)
G31244 NA non-coding upstream 277747 66892429 ~ 66917769 (+)
G31192 NA non-coding upstream 612950 66581802 ~ 66582566 (+)
G31181 NA non-coding upstream 741325 66453502 ~ 66454191 (+)
G31370 NA non-coding downstream 154368 67350795 ~ 67354687 (+)
G31410 NA non-coding downstream 286166 67482593 ~ 67517034 (+)
G31406 NA non-coding downstream 293210 67489637 ~ 67579907 (+)
G31479 NA non-coding downstream 457722 67654149 ~ 67654605 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding downstream 664206 67860633 ~ 67862273 (+)
G31000 NA other upstream 1358151 65828781 ~ 65837365 (+)
trnad-guc_10 NA other upstream 2096154 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 2096943 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 2108736 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 2148538 65022419 ~ 65046978 (+)
G31355 NA other downstream 17878 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 286908 67483335 ~ 67506898 (+)
G31407 NA other downstream 300776 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 495014 67691441 ~ 67844634 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 823613 68020040 ~ 68022940 (+)

Expression


Co-expression Network