nbas (nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840)


Basic Information

Item Value
gene id nbas
gene name nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68352427 ~ 68724643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678508.1
TTGAGCCTCTGAGGGCACTGTAGAGAGTGACGTAGCCCTGCATTGGAAACATGGCTGCAGATTTCCtcgctgaggaggaggaggagaatatTCTGTATGATTTGCTGGTTAATACGGAGTGGCCGGCGGAGACGGACACGCAGGTGCGAGGATTTAAGGAGTACAGCTCCTCTGCTGTCGCTAAAGCTGTGACAGGACCGTTTCGCTTTATTTTGCACTACCTTTGGTACAGCCCCTCAAGTTCGTCCCTGCCCCCCGGATTGGTGCGCCTCGCAGCAAAGCAAATCAACTGGCAACTGGTGCTAGCAAGTAATGGGAAGCTCCTGGCCGTGGTTCAGGATCAGTGTGTGGAAATTAGGTCGGCCAGAGATGACTTTGGATCCGTCATTGGAAAATGCCAAGTTCCCAAAGACCCGTCTCCTCAATGGCGGAAAGTGGCTTGGAGCCACGACTGTACCCTTCTGGCCTACGCAGACAGCACTGGCACTGTGCGAGTCTTTGACCTGATGGGCGGTGAGCTTTTCATCATTCCTCCGGCTGTGAGTTTCCCTGGTGATTACAGCTATGCTGCTGCTGGATTGATCTTCCTGGAGTACACCGCCAGCGCCCAGTGGTCAGCGGAGCTGCTGGTTATCACCTATGGGGGCCAGCTCAAGAGCTACCTGGTCAGGTACATGAAAGAAGCCCCAATTTTCCCAGTTGGGGAGGTCATGGTGGCTGCCAGTATGGATCCTGCTTCTacaATATCTGATGgcagtgatctgtgtgtgtgttctctcaggTTGCTGCTGGTGGGCGGTTGTGAATCAGGTGACAGAAACTCATCCAGAGCCTCTCGCTGTGGCATCACTGCCTGGAGGGCGTTATCTGGGTCACCTTACTATAAACAAGTGACCAGTTATGAAGATGATGTCTGTGCgTCCCAGAGGAGAGGTCTGTTCAAAATGCCCagttttagactcttttccaGGCAAAACAACGAGCAGgaCGGCGTGTTTAGGATGAGTGTTTCTCCTGACGGTTTAACGCTGGCTGTAATCCACTTCTCGGGCACGCTCAGTCTGTGGGACGTTCCATCGCTCAAACAGAGGAGCAGCTGGGTGCAGGAGGAGCAGCCTGGATATGAGGAGATCAACCCAGAGTGGAAGACTTCactggagaaaagaaagaaaataaaagaTAAGGAGCAGTATCAGTGTCTGATGGATGTGGGGTGGTGGAGTGATCAGGCTCTGATCCTGGCTCGCTGTTCCGGCTCTCTCACCGTCTCCTCCGTGCGCTCTCTCTCTAACTTGCTGGGGAAATCCTGTGAGTGGTTTGAACCCTCTCCCCGGGTCACGTCTGCGCATGACGGGGGCTTCCTCAGCCTTGAGtgtgagATTAAACTGGCTCAGAAGCGCTCCCGTGTGGAGAGTAGTGGCACCAGTGAAGAAGGTGATGATGGTGAGGAAGACTCTGACTCTGATGAAGAGGGCTCTGCTAAGGCTCGGTATTTTGGCTATGTAAAGCAGGGCCTGTACTACGTGACCGAGATGGAACGCTTTGCACCACCGAGGAAGCGTCCTCGCACCGTCACCAAAAACTACCGCCTGGTCAGCTTGAGGTCCACCACACCCGAGGAACTCTACCAGAGAAAGattGATAATGAAGAATATGGTGAAGCTCTATCTCTGGCTCATGTTTATGGACTGGACTCTGACTTGGTCTATCAGAGACAGTGGAGGAAGTCTTCTGTCAGCATCGCATCTATTCAGGACTACTTGaGTAAGATAAAGAAGCGTTCCTGGGTTTTGCATGAATGTGTTGAGAGGGTCCCTGAGAATGTGGACGCTGCCAAAGAGCTACTGCAGTATGGCCTAAAGGGAACAGACCTGGAGGCCCTTATCGCCATCGGGAATGGAGAGGATGGAGGCAGGTTCATCTTACCGGGTGACATCGACATCGATGACTCCTCTTACGAAGATTTCCAGTCAGTGGAGGAGGAGATGgagcgaaagaaagagagagagacgaagaaGAGACAAGAGCTGCTTAAGAAAGTGGACTTCAGCAAGTTGACTCTGGAGCAGAAGGAGCTGTGTAGaagcagactgaagctgctctGCTATCTGGACCGCCTGGCCACGTACGAGGAGATTCTGGGAGGACCCCATGCTGCAGAGCAGAGATATGACTCTGAGTTTTTCAAGAAGTTCCGCAATCAGAATATAGTCTTGTCAGCAAGAACTTACGCCAGGGAGAGTAACGTGCAGGCTCTTGACATTCTCTTCACCTATCACGGAGCTGAGCTGCTCCAGCATCGTCTCGCCATACTGTGCAATTTCCCAGAAACCACCTCTCCCCACGAGTACACTGTGCTGCTTCCTGAGGCCTGCATGGATGATAAGTCGAATCTGGTGTCCATTCCATGGGATGAGCAGAGGCACAGAGACATGGACTGGTGTGAAGATCCTCAGTGCAGGGCGATGGTGGAACCGTCTATGGTGGATGATCACTTCCTTTATGAGGAGCAGCCAGAGCTGAAACGATTCTGCACAGTCGACCCACCTATCTCTCTCCTCACTGACTGGTACCTGACCAGAGCACAAGAGATTGAGCACAACTCTCGTCAggtggaCTGTGCGCTGTCTCTGGTGCGTCTGGGGAAGGAGCGGGAGATCCCTGGGCTGGAGTTGCTTTGTGACGACCTGGTTACCATGGAGACACTGGTGTATGAGGCGTGCGAGATGAGCCTCAGTctgagggagctgcagcagctccGAGACATCGACAAGCTCCGCCTCCTCATGAAGAATtcGAGTGAGGAGTGTTATGTGAAGAATGTTCTGCAGTGGATGGTTCCCTTCCTCCACCGCTGTGAGGGTCAGAAAGGGGGGACAGCCACAGCTCTTCTCCGAGACTACCTGGTGTCCCTCGCCCGCGAGGACCTCTCACTGCCACTCAAAATCTTCCAGCACTCCAAACCAGGCTGTCAACAGAAGATCGTTGCTGATCCAGATGAGCTGATGTCTGTGGCACTGGAGTGTATCTACAGCTGTGAACGAGATGACCAGCTTGCTCTGAGCTATGACATACTGGAGTGTCTGCCTCAAAGAGGATACGGGACCGAGACGAAGGCCACGAAAGCTCTGCATGACCAAGTGGACTCTCTGGAGAAGCATCTCAGTGTTGCGGAGGTGTTGGAGAAGCATGGTCTGCAGAAGCCCATTTCATACGTGAGGAGCAGTCAGAGCAGTAAGGAGGAGGCTTACCAGCTGATGGTCAAGCTCACTCGCCACACTGGACGCAAGAACCCACCGGTCAGCGAGAGCGTGTGGAGGGACTTACTGCAGGATCTACTGGACATGCAGCAGAACGTCTACTCCTGCCTGGAACCTGCTACATGCCATCAGgtgTTTGTGGAGAGTCTGTTGTGCTCTGGTCGTGAGGAGAATGTGAAGCTGGCGGGTCAGCTGATGCAGCGGAGCTCCATGTCTCAAGACGTTCCCGGCAGCACTGCGTTTAGGGGCAAAGCTCCTCCTCGTGTGGCGTATGCCCGCAGTGTGGAGTTGGTGCTAGCCTCTGCCCGTGAATACTTCAACTCCTCAGCCACTCTTAACGACCCCTGCATCAACCTGGCACGGTCATGTCTGCAGTTGATCACTGATTGCCCTCCTCCAATCCAAGAAGAGCTGGACCTCATCAGTGCTCTCTCACAACTGGAACACTTTGGAGTTAAAGTCCTGCCTTTACAAGtgCGTCTGCGTGATGACTGCCTCTCGCTGATAAAGGAGTGTATCTCGCAGTGTCCCACAGCCTACAAACAGTCCActctgctgctggagctggccAGGCTACTGCGAGTAGCAGGTGATGATGAGGCCCGGCGAAAGGGCCAGGTTCTAACTCTGTTGGCTGAGCAGGCTCTGCAGTGTCACGACTATAAAGCCTCCTACATCCACTGCCAGGACCTGATGGCTGCAGGCTACAGTGAAGGTTGGGATGTGTGTGCTCAGCTGGGTCAGTGCGAGACTTACGCCCAACTGTCGTCCCGCCAGGAGCTGATGGCCTTCGCTCTGACGCACTGCCCTCCTGCCAACATCCAGAACCTCCTGGCGGCCTCCAGCTCTCTGCAGACACAGATTCTCTACCAGGCAGTGAATTACAAGATCGACCCCTCTCAAGCCAAGGCAGAGGGAGAAGATACGGATCAGGCTGCTGTCTCTGTCAGTGTTAGTGGAGGGTCTCTGGGAGGTGCTCAGCCTGCAGCTCTGCTTCAGAGGACCACTGCTCGCACCATGGAGGTCTTGACCAGCACCACACTGACCACTAAGGCTGTTCTCACTGCTGTCAGTGACTCACACTGGTGGAAGGAGTCTATTAACTACCTCCGCCCACTGCATGGTCAGGAGTCGGATTCTCACCGCACCGGGGCGGCTGGAGAGAACGCTGCTGTGGAGAAACAGGGATGCAGCCCTTTCTATGAGGAGTTGCTGGAGGATCCCTACGTCAGTCCAATGGAGGATGTCTACTCCACGTATGATTACGTCCCACAGGAAGGCTTTGCAGAAGTCCTGCTCCGCACTGGCAAGCTTGCCGAGACTAAGAGCGAGGGCCAGCATCTCTTCCCTGCAACAGAAGTTCTGCTCCAGCTGGCGAGCGATGCTTTTCCCCGGGACATGACGCTGGCTCTGGCCTATTTGCTCGCTCTTCCTCAGgtGCTGGATGCTAACTCGTGTTTTGAGAAGCAGCCCCCCTCAGCCCTGTCTCTCCAGCTCGCTGCCTATTACTACTCTCTCCAGATTTACTCTCGACTAGCCCCCTGCTTTAAGGACAAGTGCAGCGCTCTCTACAGGGCTGATCCGAAGGAGCTGATTCATCTGGTGACCAAGCACGTGACTGACCATGAAGGTCATGATTGGGCTGATGAGGAGCTGAaggctctgattggtcagctgCGTCTGTACAGTGAGCGGCTGACTGATTTTACTCAGGCTCAGGTGCTTCGGGGCCTCGGGCGGGGAGTGGACGTTCAACGCTTCAGCAGCGACAACCAGTACAAGAAGGAGACCATACTCGGCTTAGCAGAGACGTTAGATGAGAGTGTGTATGGGATATCTCGCTCTCTGGCCCAGCGCTACACTATTCCTCTCTGGGAGGTTCAGATGACACACCTAGAGTTCCTCTTCACTGACAGCGGCCTCTCCACCAAGGACATAGAGAGTCAGAGCGAGTCTCTGAGTCTTTTCCACACTCTAAAGACCAATCCTGAGTCCTTCTACAGCCACATGAGCAAGTATGTGTACCCAAGCATCGCGGGCACAGACCTGCAGAGGCTGCTCTACTACTACACCCTTCTGGACAACTGCTCCTGCAACGACTACCTCCCTCCGTCCGCCATGACTCTTGATACACACGTCAAACTGCTTAAGAAACTCAAGGCTGTGGCCAATGGGCTGGATTATAAGAAGCTAACAGACGAGGACTCTGACCCTCTGAAGGCTCTGGAGCCAGTGCTGACCAGCCAGAATGTTCTGTCAATCTCCAAACTGGCTGCACGGATCCCTCTGAAGGCTGATGAGGCTCTCACTGCGAGTGCTGTCCACTCCACATGGCTACATAAGCTTTTCTGGGAGGGGGATGCCCACGTCCTCAAGAGATCACCCCAAACTGACCAGGAATACCTCCATGCTTACGACACCTGCAGCCAATACTTCGACAGGCTGCTGCCTTCAGATGCTGTGAAGTTCCTGGATGCCATCACCTTTTCCCCGGAAGCAGCCTGTCATCTGTCTGTTGAGACCAGAACAGAGATCTGTAGTCGAGCGCTGAAGGCTCTGAAGGCCATCAGTGAGAAGAGCAAGAAGAGGAGCGGAGATGATGGAACAATTGAAAGCTCCACTTTCAGCTTTAACCACGCCCTCACCCACCTGCAGCAGTCCCTCAACCATCTGGAGACACTAGGCCACGCCTTCCCCCTTTCACTCAGAAACAGCCAAGAGaagCGTCTGCAGGAGTATGGCAGACAGTATGATCTCTCCAGGTCAGACAGGGGGAAAGTGCAGCAGTTGGCTGTCACCATGTCGCTGGATGGTCAACCACTGGAGCGAATTGAGCAGCTGCTGGGGGCCGCGGTACACCTGAGTGACCTGCAGCCGCGAGGTGTAGTGCAGGAGGCAGTGCAGAGAATCATATCATCACTCAGTGGTGATGAAGACATCCTAAAGGATTATTCAGACCCTATGAAAGTGCTGGAAGGCATAGTGGAAGCGGTACAGGACGACGTGCAGAAAGGGGGAAGTGCGGTTTCGTCTGAGGACCTGTTGGCATGGTTACGGCCGTTCTGCGGGGACGACTCGAAGCCTGTGAGGCTTCGCATCGAGGTTCTGCAGATCCTGGAACATTCTTTCCACCTCAGTGACGAGGACATCCGCCTGCTGGTGTTCTTCAGGAGCCAGGCAGTGCTTAAAGCCTGCTGGCCAAACCgagagtGTGAGATGAAGGATATTGAGAACGAGGAGAAGCGCTACTCTCTCTTCTTGGAGCTTCTGGAGTCTAGTAGAAAGTGGGAGGAGTTTCAGCACCTCATGCTTCTCTTACAAGCATGGCCTCCAACGACCAACAAGAGcagGTTGGAGAGTGAGCAGAACCCGTGGGTGGGTCTGACAGCAGCGCTGCTCACACACGGCACAGCACCGGCAGGGGTCAGCGTGGGGGGAGAGGTGGTGGCCATGTGCCGCTCGCTCTACACTACCAAGCACAAACTCAGtccacagtgtatTGGTCATATCTCGTCTCTGCTGTTGAGTGCTGGGCTGAAGCTGGCTGCTCTGAAACTGATGGCCGAAAGCAGAGATGAGCAGCTCCTCAAACTGACCCTGGATCAGATCAAAGGCATCTCTGAAATAAGTGACGAGGTGTGTGATTCGGAGCTTCTGTCTCTGCTTCTGGATGCTCGTCTGCTGGTCAGTTGCGTGGACTCTGCTCTGTACCCGGCGATGGTCTCTCACATGCTGAGCGAGGGCCGCTgggacgtggaggaggccgccGCAGCGCTGCAACAGGCTGGACATAACACTCAGGCTGGAGCTTTGCTGCTCGCCCACCGGGGAACTCACCCCGCTCTGAGCACCTTCAACACCGCCCTCAAAGTCATCCGGAAGTGGCTGTGAGGAGAACTTGTGTCTGTTCACCTCAGTTTATAGACAGTCCACATTGTGCCCTTCTAAGTTGCATCAAATTcttattggtaacactttacagtaagggtacattaatttacagtacTTACGACCGAATAactcaactaattattagttCACACATTTTAGACCGTAGTTAAGAATTTAGTGAccatcacaattttttttaactaatgtctaaatttactgttatttacaaaatttgtaagcattaaaatgtagtcattgttaataatgtattaactagtctcaataaaaaattatttcaccatttaacaatgttcattACTATCGTATATACTGTTAATTAAAGCACCGTTATTGTAATGTGTTACCTTCTTAAACCCTATCTGGGTGGGATTAGGtactcagggggtcctgggataattttttcttttatgtggGGTCCTCcgtaattttatttccatccaGAACGAC

Function

symbol description
nbas Predicted to enable SNARE binding activity. Involved in negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and nuclear-transcribed mRNA catabolic process. Acts upstream of or within embryonic viscerocranium morphogenesis and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be located in endoplasmic reticulum. Predicted to be part of Dsl1/NZR complex. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in infantile liver failure syndrome. Orthologous to human NBAS (NBAS subunit of NRZ tethering complex).

NR:

description
PREDICTED: neuroblastoma-amplified sequence

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
K20473 NBAS; neuroblastoma-amplified sequence

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678508.1 True 7619 mRNA 0.53 53 68352427 68724643

Neighbor

gene id symbol gene type direction distance location
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding upstream 310059 68023937 ~ 68042368 (+)
LOC103035042 LOC108439590 coding upstream 333436 68004234 ~ 68018991 (+)
LOC103045824 LOC108256302,LOC108439581 coding upstream 422512 67878540 ~ 67929915 (+)
swt1 NA coding upstream 773346 67533815 ~ 67579081 (+)
LOC103028999 NA coding upstream 824071 67515932 ~ 67528356 (+)
nr2e1 nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776 coding downstream 479191 69203834 ~ 69215863 (+)
afg1l NA coding downstream 519075 69243718 ~ 69279965 (+)
foxo3 foxo3,LOC108436468,LOC107679488,LOC107601202,LOC107696126,LOC107601425,LOC107726429 coding downstream 561372 69286015 ~ 69321707 (+)
armc2 NA coding downstream 613898 69338541 ~ 69359553 (+)
cep57l1 NA coding downstream 716800 69441443 ~ 69450742 (+)
G31629 NA non-coding upstream 70831 68281340 ~ 68281596 (+)
G31596 NA non-coding upstream 255367 68096815 ~ 68097060 (+)
G31595 NA non-coding upstream 276846 68075197 ~ 68075581 (+)
G31583 NA non-coding upstream 364750 67987433 ~ 67987677 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding upstream 490154 67860633 ~ 67862273 (+)
G31715 NA non-coding downstream 241836 68966479 ~ 68966810 (+)
G31720 NA non-coding downstream 313867 69038510 ~ 69039924 (+)
G31724 NA non-coding downstream 372648 69097291 ~ 69100562 (+)
G31758 NA non-coding downstream 731098 69455741 ~ 69546704 (+)
G31932 NA non-coding downstream 1380935 70105578 ~ 70106122 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other upstream 329487 68020040 ~ 68022940 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 507793 67691441 ~ 67844634 (+)
LOC103027733 NA other upstream 845529 67483335 ~ 67506898 (+)
G31407 NA other upstream 854730 67497203 ~ 67497697 (+)
G31355 NA other upstream 1137241 67214305 ~ 67215186 (+)
G31702 fam84a other downstream 102000 68826643 ~ 68827572 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 282798 69007441 ~ 69161883 (+)
G31939 NA other downstream 1472282 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 1578393 70303036 ~ 70329028 (+)
G32105 naprt other downstream 1904289 70628932 ~ 70639739 (+)

Expression


Co-expression Network