LOC107197929


Basic Information

Item Value
gene id LOC107197929
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71988157 ~ 71997641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678518.1
ATGGATGAGGATAAAGGGGTGGACTTCCAGTCCCTGAAGGCTAGGTTCCAGAATGATGAAACTTTGAAGATCCGAGTCAAACCTGCCATCCCAGAAAAACCCAAAGCTCTCACCTCTCCAACCTTTCCCACCTCGCCCACCACCAAAATAAGCAATCCTCTGGTTACCAGCATCATGGAGAACCGCATGTCCTTTACTCCTCGAGTGGTCTTCAAAGATGACAAAAAGAGCCCCGGCAAGCGGCCGGTATCAATGCCCGAACCTTTACCATTAAACATGAATCCTGAATTGGTGGACAAGAAGCAAAAAAAGGAAGGGGATCTTATCAAACAAGCATTGAAAGATAAGAATCTTCCCCTGGTTTTGCCTGTAAATCCTGTTATTCCAGTCATTGAAGAGACCCCCAAACCTGATCCTATCTCAGCCTCTTCAGCTGTGGCATCTCCAAGCAAAGTTTCCACACCtaaaaagaagatttttttcaacttttcaaaATCGCCCAAAgctgagaaagaaaagagagacatTGCAGAAAGTACAGTTCCAGTGAACCCTGCACTTGATCATCTTGCTCCCAGCAGCTCCACTCCAGTCAACTCAACTCCTATAGTTAATAAGCCTGTGTCTTACAAGGCTCTCGTTCCCCCAAGTCAAGCAGAAGTTGTTCCAGCATCCAGTAGTCCAATCATCCCTGTTATTCCTGCTCCAGTTATTTCTAATCCTGCCATTTCTGAGCCAGAGGTTCCTGAAGTGCGGACAGTTCCAGAAATGGACATTGTGTCCCAGGTTTGTTCTGAACCAGACATCTTAAAGCCAAAAAGTCCTATTCCAGTTGCAGTGCCAGATGTATCTTTGCCTGAGAACATGACGACAGAAATGCCAGATTCTACAGAGATGCCAGATATTCTTGATATGGATATTCCTCCTCCAATTATTCCTGAAGACATTCTAGATGCAGATATTTATTCCCTAGATATACCTGTCCCAGTTACTCCTGATCTTTTTATCACTGCACTTTCTACTTCATCTACTCCACCTTCCAGCAGTCCCAATCTCTCCCGCACAGCCTCCCCTGCCCCAGTCAGATCTGCATCAGTCACACCTGAGCCAGCTAACCTGGTTCTGCCAACGCTAACCCCAAATCCAGATGCAGCTTCTAGCCCAAGAACTTCTCCAATATTGTCATCTGCAGCTACAGACGTAAAgccggtgacagaaaacggcaCTGCTGAATCTCATGAAGGGATGGACCAGACAGAGAAGACACCAGAGCTTCTGTCATCCACTTCATCCACACCCATTTCAGCCTTGTCTGTTTTAGCAAGAGCTGAGGAGATGGCCCCCGTCAAACACACCATTTGTGATCAGAGAGTGCTGAATCTTCTAGAAAAGGCTAAGAGAAAGCATAATGTGAGCCACCAGACACCCACACCTACTACACCTGAATCTTCAGGAATGGTCTTACCTGACACAACCTCTCCAGCATTGGCTCCAGTTGAGTCTTCAACACCGAAGAATTTACATCCTGAAGCCACCCAAGCTGAACCAGCCCCAGCAGTGGAAGCTGCACAGGTCCGACAATCTCTTGTTGTGGATCTTCCTGATATCCCTCCAGTTGACTATGAGGATCAGTCGGGGGATAGAGCTTCAGTCAGGTCTAATACCCCTAGCTCTGAAACAGCCCTGACTAACGGCCTAGATCACAACCGTGCTTCACCCGCTCCTAAAGTGCTGACTGTGCACAAACCTGCTGCAGCGAAGGGTAAGCCTCCGCCACCTCCACCTAGAAAGACCCCCGTGACTGTACCCAATGGAAGCATCACGCCAGAGAAGCCAGCGTGTGTCCTGAGCACAGATCTACAGACCTCCACTCTGGCGGATCAGCCAGTGGAGGAAAACGGGATCATTATTCCGGCTCCAGTGGATTTCACCTCAGAAAATTCGTCATTGGACGATTCAGAATTTGATGATTCATCTGAACCAGTTGCTCTCGAGGATCCACAACAAGCTGAACTTCCAGAACATGAAAGTTTTGCATTTTCAGTTCATGAACAAGCCTTTTTGGAACAGTTATATCCAGAATATCAGACAAATTCAGAGGAGTTTGTTCCAAGTGTGGAGACCACAGAAACCGATTCTGCTCCAAAAGCAACAGGAACTCCAGATTCAGTCCCAGACTCTCCTGTCAGTCCATCTCCATCAGGGACCCTGGAGATGAATGACAACGGTGACAATAACATCTATGAAGACCTAGCAGCCAACAAGAGACAAAAATCCACTAAGAAACCACGCAAAATAGTTCCCATGAATCCATATGCTGATTCTGTTAATGTGATTACAGGAGAGGAGGAGGCGATGTATGAGGTCAAGCTAAGGAGACCTGCAAAGGCCGTAAGAATGACCTGGCAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678518.1 True 2412 mRNA 0.47 7 71988157 71997641

Neighbor

gene id symbol gene type direction distance location
LOC111191308 LOC108415780 coding upstream 286863 71698448 ~ 71701294 (+)
oma1 LOC107581495 coding upstream 648857 71316242 ~ 71339300 (+)
mysm1 mysm1 coding upstream 673681 71302470 ~ 71314476 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding upstream 702131 71278318 ~ 71286026 (+)
suco suco coding upstream 732083 71191820 ~ 71256074 (+)
plpp3 plpp3,LOC107712879,LOC107716555,LOC107697342,LOC107657212 coding downstream 38565 72036206 ~ 72084245 (+)
LOC111191956 NA coding downstream 209306 72206947 ~ 72208136 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 561716 72559357 ~ 72567455 (+)
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding downstream 606572 72604213 ~ 72610182 (+)
sirt5 sirt5,LOC107687181,LOC107712885,LOC107581456 coding downstream 629599 72627240 ~ 72636248 (+)
LOC111191996 NA non-coding upstream 525280 71457906 ~ 71462877 (+)
G32379 NA non-coding upstream 696298 71261305 ~ 71291859 (+)
G32219 NA non-coding upstream 856116 71129690 ~ 71132041 (+)
G32210 ccnk,LOC107560198 non-coding upstream 882366 71103225 ~ 71105791 (+)
G32174 LOC108410406 non-coding upstream 1028400 70945974 ~ 70959757 (+)
G32535 NA non-coding downstream 151634 72149275 ~ 72149476 (+)
G32539 NA non-coding downstream 152927 72150568 ~ 72150791 (+)
G32556 NA non-coding downstream 244844 72242485 ~ 72242811 (+)
G32570 NA non-coding downstream 325020 72322661 ~ 72323006 (+)
G32579 NA non-coding downstream 365310 72362951 ~ 72363341 (+)
dab1 dab1,LOC107581465 other upstream 7794 71463100 ~ 71980363 (+)
G32229 NA other upstream 818601 71167524 ~ 71169556 (+)
G32225 NA other upstream 846973 71137512 ~ 71141184 (+)
G32198 NA other upstream 912271 71073848 ~ 71075886 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other upstream 1120514 70856811 ~ 70867643 (+)
usp24 usp24 other downstream 405893 72403534 ~ 72497064 (+)
G32641 NA other downstream 598265 72595906 ~ 72596937 (+)
sf3b6 SF3B6,sf3b6,pm14 other downstream 784152 72781793 ~ 72786363 (+)
cd2ap cd2ap other downstream 1147009 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 1441415 73439056 ~ 73506987 (+)

Expression


Co-expression Network