LOC103023152


Basic Information

Item Value
gene id LOC103023152
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 551043 ~ 558402 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678694.1
CCTTTCAGATCCTACTACATATAACATGGCAAGCTCAAGCCAAGAAGAGTTTACACTTGTCATTCCTTGTGATGAAATTGATTCCATTGGCTCCAGTGTCACAGTGCCCTGTCACCTATCCCCTGATATCAGTGCGGATGCCATGGAGATCAGGTGGTTTAAGGGGACAGACTGTGTTTGCCTCTATAAGAACAGGCAGGTAACAGAGGGGCGGGGTTTCGAGGACAGAGTGAACCTGTTCAGGGAGGAGCTGGAGAGAGGAGATGTGTCCTTACAGCTGAGAAACTGCACAGAGTCAGATTCGGGGAGTTACCTGTGCCAGGTGAAAAGTGACCTCAGAACAGAAGAGATAACAGCAGCTGTACAGATGGTCAGTGATGACTTTggctggataaaaaaaatggttaaaGTAGAGGCAGAATGGACTGAAGAGGAGCGAATGAAAATGGAGGAATCTGCTGTGCTAACTGaGTTTAAAGCAAGCAATATGGTTGATCTTGTCAAAAGAATGGATGAGGAAAGGAGAAAAGAGCAACAGCAACTGAAGGAAGCCAGGATTTGTTTGGACAACATTTTGAAAGAACTAGAAGATAAAGATAATCAACTGTATCAACTGCATCAGATGTTAGCAGAGAGTGataaaaaaattcAAGAGCATTTAGCTGAAATGGAGAGACATGAACAGCTGGAAGATTCACATTGTGCTGgtcacaTGGAGACTGAAGATGCGGCTACTTCTATAAGAAAAACACATAGTCAAGAGCTACCTCCAGATATGAACAGTGAACCTGGTGTAGATTCTTCAGAATCAGCTCCTGCTTCAGAGCTCAGGCTGGTGCTGCTGGGGAGAACTGGATGTGAGATGAGTGCAGCAGGAGACACCATCCTgggtggagaggagaggagcCAGACTGGAGCTTCTACAGTGAGGCAGCAGAGTGAGAGCAGACAGGGGGAGGTGGCTGGGAGGAAGGTGACTGTGGTGGAAACTCCTGACTGGTTCAGTCCTGAAAGCTCTCTGGAGGAATTGAGGCAGGACGTGGGACTCTGTGTCCGTCTGTCTGCTCCAGGACCTCACGCCTTCCTCCTAGTGATCCCGGTAAAGCAGTCCATTGGAGAGGTGAAAGGGATGGTGGAGAAAATGGAGGAGATCTTTTGGGAGATGTGTTGGAAGAACACTATGATTCTTTTCACCGTTACTGGTGAACAACAGAAGAAAGACATTGAACTACTGCTGAACTCATCTGAAGATGAGGATATCCAGAGGCTTGTAGAGAAATGTGAGAACAGGTTTCACTGTCTGAACATTAAGGAGAGTGGAGATGATTCTCAGGTGTCAGAGCTGCTGGAGAAGATCAAGGAGATGGTGAAAGGCAATGGAGGAGGTTTCTATAGCAGTGAGATCTACCGTGAAATCAGGGAAATGGAGAAAAGGATTactaaagaaagagaagagaataaacAGAGGGAGATACAGAAAGTTAGAGACAAACTAGAGAAGGAGGTCCAAGATGCTTTAATGGACGTAATGGAAGAAATCCAAGAGCTTGAGAAGAGAATACAGCAACATGAGGAACAAATACTAGAATTGGAGAGATTACTGGAAGAAGAGAGAAATGATGAAACAAAAAGAGAGTTGGAGATAcagctaaaaaaagaaattcagcTGAGGAAAGAGACTGAACAGAAGCTGAGAGAACTAAAGATCGCATGGGACAAAAGGGAAGCCCAGATGAAAGAAAAGCACAGACAGGAGATGGATGAGATCATAGAGATGTATGAAGGAGAAGTCAGGCTGGAGGCAGAGAGAAACCTCATGAAGATCATCCTACCCGAACTCCACCGTACCGTTTGGGTTCTTATCTCTAAGATGCAGAAACAGTTCCTTGTGAAGATGGGAGAAAAGGAAAGCGAATTAATGACCCTAAAACGGAACCTGGCAGAACTCCAGGAAAACTACAGGCAACTGGAAAATGATTATCAGACAGCTCTGAAGAACATGGAAGACACAGAAGCAGGTGGAGACGAAGAAAGAACAGGTGCAGTGGCAtctgaagagagagaagaaacagAGCAAAGTCAAGATGAAGTGGAACGTTTACCAGAAGGAGAAACAGATGATGGTGAGGGAAAAAGAACTGAGGAAGATGAAGAAAAGGGCGGGGTTGAGAAGACCGAGGCTGGGGATGAACAGGAAACAACACATGATGGTCAGGAGGAAGCCAGAGGAATTCGTCAACTCTTCAACGTCTGCTGCTGTTTCGTTCGACGTATGAATCCTGTGGACACTCAGTGAACTTTGAACTAAAGAACtataataatgattaaaatggCCCACAAATAAACTACTAATTTtcgtttttaatttaattcaactcAAAACAATGGCTTAAAACTAAGCTTGAATGTATTTTGGGAAACTAAAAAAGGCAAATGAT

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678694.1 True 2438 mRNA 0.44 8 551043 558402

Neighbor

gene id symbol gene type direction distance location
LOC103028849 NA coding upstream 26905 509572 ~ 524138 (+)
LOC107196798 NA coding upstream 56674 483139 ~ 494369 (+)
LOC107197531 NA coding upstream 82959 448393 ~ 468084 (+)
LOC111194470 mogat3 coding upstream 111479 430383 ~ 439564 (+)
LOC103030708 NA coding upstream 240179 303636 ~ 310864 (+)
LOC111191737 NA coding downstream 42026 600428 ~ 609429 (+)
cryab cryab,LOC108259721 coding downstream 879404 1437806 ~ 1442109 (+)
LOC103029064 LOC103029064,LOC108428730 coding downstream 899068 1457470 ~ 1469889 (+)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding downstream 939306 1497708 ~ 1500545 (+)
alg9 alg9,LOC107691744 coding downstream 975627 1534029 ~ 1549757 (+)
G15656 NA non-coding upstream 12756 464564 ~ 538287 (+)
G15660 NA non-coding upstream 57405 493270 ~ 493638 (+)
G15659 NA non-coding upstream 64589 459789 ~ 486454 (+)
G15636 znhit1,LOC107752359,LOC107661214,LOC106567874,LOC108259938 non-coding upstream 105383 443166 ~ 445660 (+)
G15612 NA non-coding upstream 158870 318133 ~ 392173 (+)
LOC111191745 NA non-coding downstream 25308 583710 ~ 588307 (+)
LOC111194487 NA non-coding downstream 33826 592228 ~ 593633 (+)
LOC111194483 NA non-coding downstream 35253 593655 ~ 597730 (+)
LOC111194479 NA non-coding downstream 54635 613037 ~ 615239 (+)
G15724 NA non-coding downstream 127671 686073 ~ 705802 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 429862 70784 ~ 121181 (+)
LOC103025578 NA other downstream 764114 1322516 ~ 1340800 (+)
fdxacb1 fdxacb1 other downstream 958095 1516497 ~ 1529417 (+)
G15839 NA other downstream 1122757 1681159 ~ 1682022 (+)
nrgn NA other downstream 1592228 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 3957595 4515997 ~ 4517309 (+)

Expression


Co-expression Network