tex10 (tex10,LOC107706105,LOC107689903)


Basic Information

Item Value
gene id tex10
gene name tex10,LOC107706105,LOC107689903
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6185481 ~ 6229459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679537.1
GTGCGACGCATCCAGCAGCCTGTGTTCATGAAGGACCCCAAATGAACAATCGCCCATAGAAAcacattttgattattttggagaaaataatttaaaataaagctgaTCTGATTCGTTTCTGCTCTGAGAGCTAAAGCGCCGGACTGTAAAAATGACCAAGAAGAGGAAAAGGCAGGACGATTTTCATAAAGTCAAACTAAAAGTAGGCAAGAAGAAGCCCAAGGCTGAAAATGCAACCGACACCAACTTCAGATCAAAGAGCATCCATTTACCGGAGCAGCTGACTCGTGACGCCAGTGGACCCACCACTCACCGGCAGCTTGGCATTaaggACCTTCTCTCTCAGCTGCACCACTACAACAGTAATGTGAAGCTGGGGGCTCTGGTTGGTTTGCGAGAGCTGCTGTCGGCGCACccctctctggtggagcagcaCGCCTCTGTGGTGCTGACCGAGGTGGCTGCACTCTTCACTGATAAAGACGGAACGGTGCGGACAGCGGCAGTGCGGCTCCTGCGCTTCATGGCTCAGTGCATTCCCGCTGAGCGGGTCGCCCCTTTCTTCCCCCTCCTCAGTGCTCACCTCACCTGCGCCATGACCCACATCTCACAGGGTATCCAGGAGGACGCTCTGCGGGTGCTGGACGTGCTGCTGGAGCACTACCCCACCCTGCTGTCCCAGAGGCACACAAAGCTTCTGACCAACTTCTTGGAGCTCATCTCACAGAGGAGACTGGGCAAGACTGCGGGGGACAGGACAGTTAAAGGCAGCTACGCCCTGTCCATCACCACCAACCGCTCGCTGACAGCCCAGCAGTGGAGACTTACTGTCCTTCTCAGgttagGCCGCTTTCTACAGGCAGTAGTGGAGGAAAGGCCCACAGAAGATGGTGTGGCATGTGGAGGTGGAGTTGGGATGTGGAGTGAAGAGAAAGGTGTGGTGACGCCTGTGGAAGTCAGCTGGGAGGAGCAGATATTCAGCAAAGGAGGAATCCGGGTGTTTGAGAACTCTGGAGTCAATCCCACACCACACTCCACCTATCGGCTGAGGCCGGATTCTGAGCCCAGGACTAGTGTGAGTGAGGATCTGTGCTCAGCAGAGACGGTGCAGGGCTTTGCAGAGACTCTGGTGCCGCTGCTTTTGGAGGTGTGGGTGGAGGCCATGGGTGGGGACAGCAGAACGCAGTCCGACAGCGGTCACCTGCTTTCAGAAGAGGCCATGGCACTCATGTTCCAGATCCTTACAATACTGCAGCTTCTGCGGAGGCTCGTACCGCATAGAGACCAGCAGGATTTGCTGGATGCCTGGTTTCGGAACACGTATCTCAACGACTACAAACAGCACTTCATGAAGAACTTTCCCTATGGTCAGCTAGAAGTGGCCAAGCACAAGAAAAAAATTGACATTAAGAGGAGCAGGCAGCAGGTGGTGGGTGGTGGTGTTGCTGGAGGAAACGTGGAGCCGTTGGCTCTGAATGTCATGCTGTGTCAGGTGATGGTGACTCTCAGCCTGAGGGGGCGGGACAACGTTGCCGGCCTGGATTCAGACTGGCTCGGACCAATCCGAGCGTTTGTCACGGACACGCTGTCCAATGGAGGCAAGCTGAGCTCCAAGCACCTGGCGGCCCTGCTGGAGGTGGTCTGGAGGATGATCATCACCCAGCGAAGCCGAGCTGTGACCGAGGAGCTGCTGCAGGCAGTATATGTTCAGTACCAGCAGAAGAACTTGAGCTTGTCTGTCCGCACCCTCCTGCTTCGCTTCTTTAGACAACTCTACATACAGGAGCATCAGAAGCAGCCTCATATtgccaggagcAGGATATTAGCTCGTTGGTTGGCTTCATTGCCAGTGCAGTTGGTGCAGCTGGGCAGTCGTAATCCTCAGCTCTCGGCGCAGCTCCTGCAGACGGTGCAGTCGGCCGCCGCGTGGGGCAACAAAGACCTGCTGCGCAGTCTGCAGACGCATGCTTGCAGCCTTTACGatcctCAGGAGGGCTGCGTCGTGGTGTTGCCGGTGGAGCATCAGCAACAACTTGTTCAGATTCTCTACTTCCTGCCAGCTTTTCATGCTGATATCCTGGCCTGCCTCAGCCAAGTCTGCAACACTGGGAAAATCTCAGCTAGCCTAGCCGCCACACTCATCCGCACCGTACACCTGAGGTCTCCTCTAAGTGGCTGGTCGAGCAGTTCACAGGATGTGCCAGTGAGGGACGTGGATTACCTCAGTTTCCTTTTCTCCACTCTGACAGGATTTTCTTCGGAGGGTCTGAGAGTGCTCCAGCAGGCAGGAGAAGAAGGCCTGCTGCCCTCCTCGTCCCTCTCACCCCTCAGTGTGTTCCCCACCCCGCTGGAGCAGTTCACACACCACTGGGACGTGGTTGAGGAGGTGTGCCACTGCTTGGAAACTCTGGGCTCTCGGTCTCAGTGCTTCGATGTTCTGCAGAATGCTATTGTGAGGAACCTGTGTGGGCTGGTGGTGGTGCCAGACTGCGTGTGTGCCGCAGTGCTGAGGTGTGTTCCACGCCTGCTGGATCTCAACTTCCTGCCCAGCGACACGCTCCTCCACTTCCTGTCTGACTGCTGTCTGAGCATGCTCAGTCTGCTGCTCCAGCTGGAGCAGAGCGCCCGCAAGAGGGATGCGGTGTGGGAGGCGTGTTTCGCGGCTCTGAGCACGGTGCCTCGGCTGCTGCGGCTGGTGCTGCAGTCTCTGCGCGTGTGTGACCTGTGTGAGTCGGAGCTCCCTCTGCTGGCTCAGATCCTCTCGCTGCTCCTGCAGCACACGCAGCTCCGTAACCACATGGCTGCCAACAGCGCCCTGCTGCAGAACATCATTCAGGACCTGACGCGTTTCTCTGGCGGGGAGACTCGGGAGCAGTGGCTGACCGACCTGCTCTACTGCTACAGCGTGACCGCCTCCACTCACCGAGCCAACATGGCTGCTGCGAGGGACATCTTCTAAGCAGCGCCgtgattcagtgtttttcctcttcagtgttctttaatcctttctttattcttttctccattttcacatttttttaaaaacgagggAAAAAATAAACCTGCTGTGATAATTACTTAA
>XM_022679541.1
TGTGCGACGCATCCAGCAGCCTGTGTTCATGAAGGACCCCAAATGAACAATCGCCCATAGAAAcacattttgattattttggagaaaataatttaaaataaagctgaTCTGATTCGTTTCTGCTCTGAGAGCTAAAGCGCCGGACTGTAAAAATGACCAAGAAGAGGAAAAGGCAGGACGATTTTCATAAAGTCAAACTAAAAGTAGGCAAGAAGAAGCCCAAGGCTGAAAATGCAACCGACACCAACTTCAGATCAAAGAGCATCCATTTACCGGAGCAGCTGACTCGTGACGCCAGTGGACCCACCACTCACCGGCAGCTTGGCATTaaggACCTTCTCTCTCAGCTGCACCACTACAACAGTAATGTGAAGCTGGGGGCTCTGGTTGGTTTGCGAGAGCTGCTGTCGGCGCACccctctctggtggagcagcaCGCCTCTGTGGTGCTGACCGAGGTGGCTGCACTCTTCACTGATAAAGACGGAACGGTGCGGACAGCGGCAGTGCGGCTCCTGCGCTTCATGGCTCAGTGCATTCCCGCTGAGCGGGTCGCCCCTTTCTTCCCCCTCCTCAGTGCTCACCTCACCTGCGCCATGACCCACATCTCACAGGGTATCCAGGAGGACGCTCTGCGGGTGCTGGACGTGCTGCTGGAGCACTACCCCACCCTGCTGTCCCAGAGGCACACAAAGCTTCTGACCAACTTCTTGGAGCTCATCTCACAGAGGAGACTGGGCAAGACTGCGGGGGACAGGACAGTTAAAGGCAGCTACGCCCTGTCCATCACCACCAACCGCTCGCTGACAGCCCAGCAGTGGAGACTTACTGTCCTTCTCAGgttagGCCGCTTTCTACAGGCAGTAGTGGAGGAAAGGCCCACAGAAGATGGTGTGGCATGTGGAGGTGGAGTTGGGATGTGGAGTGAAGAGAAAGGTGTGGTGACGCCTGTGGAAGTCAGCTGGGAGGAGCAGATATTCAGCAAAGGAGGAATCCGGGTGTTTGAGAACTCTGGAGTCAATCCCACACCACACTCCACCTATCGGCTGAGGCCGGATTCTGAGCCCAGGACTAGTGTGAGTGAGGATCTGTGCTCAGCAGAGACGGTGCAGGGCTTTGCAGAGACTCTGGTGCCGCTGCTTTTGGAGGTGTGGGTGGAGGCCATGGGTGGGGACAGCAGAACGCAGTCCGACAGCGGTCACCTGCTTTCAGAAGAGGCCATGGCACTCATGTTCCAGATCCTTACAATACTGCAGCTTCTGCGGAGGCTCGTACCGCATAGAGACCAGCAGGATTTGCTGGATGCCTGGTTTCGGAACACGTATCTCAACGACTACAAACAGCACTTCATGAAGAACTTTCCCTATGGTCAGCTAGAAGTGGCCAAGCACAAGAAAAAAATTGACATTAAGAGGCAGCAGGTGGTGGGTGGTGGTGTTGCTGGAGGAAACGTGGAGCCGTTGGCTCTGAATGTCATGCTGTGTCAGGTGATGGTGACTCTCAGCCTGAGGGGGCGGGACAACGTTGCCGGCCTGGATTCAGACTGGCTCGGACCAATCCGAGCGTTTGTCACGGACACGCTGTCCAATGGAGGCAAGCTGAGCTCCAAGCACCTGGCGGCCCTGCTGGAGGTGGTCTGGAGGATGATCATCACCCAGCGAAGCCGAGCTGTGACCGAGGAGCTGCTGCAGGCAGTATATGTTCAGTACCAGCAGAAGAACTTGAGCTTGTCTGTCCGCACCCTCCTGCTTCGCTTCTTTAGACAACTCTACATACAGGAGCATCAGAAGCAGCCTCATATtgccaggagcAGGATATTAGCTCGTTGGTTGGCTTCATTGCCAGTGCAGTTGGTGCAGCTGGGCAGTCGTAATCCTCAGCTCTCGGCGCAGCTCCTGCAGACGGTGCAGTCGGCCGCCGCGTGGGGCAACAAAGACCTGCTGCGCAGTCTGCAGACGCATGCTTGCAGCCTTTACGatcctCAGGAGGGCTGCGTCGTGGTGTTGCCGGTGGAGCATCAGCAACAACTTGTTCAGATTCTCTACTTCCTGCCAGCTTTTCATGCTGATATCCTGGCCTGCCTCAGCCAAGTCTGCAACACTGGGAAAATCTCAGCTAGCCTAGCCGCCACACTCATCCGCACCGTACACCTGAGGTCTCCTCTAAGTGGCTGGTCGAGCAGTTCACAGGATGTGCCAGTGAGGGACGTGGATTACCTCAGTTTCCTTTTCTCCACTCTGACAGGATTTTCTTCGGAGGGTCTGAGAGTGCTCCAGCAGGCAGGAGAAGAAGGCCTGCTGCCCTCCTCGTCCCTCTCACCCCTCAGTGTGTTCCCCACCCCGCTGGAGCAGTTCACACACCACTGGGACGTGGTTGAGGAGGTGTGCCACTGCTTGGAAACTCTGGGCTCTCGGTCTCAGTGCTTCGATGTTCTGCAGAATGCTATTGTGAGGAACCTGTGTGGGCTGGTGGTGGTGCCAGACTGCGTGTGTGCCGCAGTGCTGAGGTGTGTTCCACGCCTGCTGGATCTCAACTTCCTGCCCAGCGACACGCTCCTCCACTTCCTGTCTGACTGCTGTCTGAGCATGCTCAGTCTGCTGCTCCAGCTGGAGCAGAGCGCCCGCAAGAGGGATGCGGTGTGGGAGGCGTGTTTCGCGGCTCTGAGCACGGTGCCTCGGCTGCTGCGGCTGGTGCTGCAGTCTCTGCGCGTGTGTGACCTGTGTGAGTCGGAGCTCCCTCTGCTGGCTCAGATCCTCTCGCTGCTCCTGCAGCACACGCAGCTCCGTAACCACATGGCTGCCAACAGCGCCCTGCTGCAGAACATCATTCAGGACCTGACGCGTTTCTCTGGCGGGGAGACTCGGGAGCAGTGGCTGACCGACCTGCTCTACTGCTACAGCGTGACCGCCTCCACTCACCGAGCCAACATGGCTGCTGCGAGGGACATCTTCTAAGCAGCGCCgtgattcagtgtttttcctcttcagtgttctttaatcctttctttattcttttctccattttcacatttttttaaaaacgagggAAAAAATAAACCTGCTGTGATAATTACTTAA

Function

symbol description
tex10 Predicted to be located in nucleolus. Predicted to be part of MLL1 complex. Predicted to be active in nucleus. Orthologous to human TEX10 (testis expressed 10).

NR:

description
testis-expressed protein 10 homolog

GO:

id name namespace
GO:0071339 MLL1 complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14827 IPI1, TEX10; pre-rRNA-processing protein IPI1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679537.1 True 3082 mRNA 0.56 16 6185482 6229459
XM_022679541.1 False 3077 mRNA 0.56 16 6185481 6229459

Neighbor

gene id symbol gene type direction distance location
LOC103023602 LOC107579097 coding upstream 105430 6049397 ~ 6080051 (+)
tbrg4 NA coding upstream 152738 6012790 ~ 6032743 (+)
znf804b NA coding upstream 520838 5440694 ~ 5664643 (+)
LOC103032089 stoml3,LOC102781741,LOC105011208,LOC108236983 coding upstream 976518 5198691 ~ 5208963 (+)
LOC103032405 slc25a15,slc25a15a,LOC107561472,LOC107670691,LOC107593465 coding upstream 989958 5186497 ~ 5195523 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132 coding downstream 63613 6293072 ~ 6323895 (+)
alg2 alg2,LOC107595974,LOC107706186 coding downstream 314816 6544275 ~ 6552001 (+)
frrs1l frrs1l,LOC107595962 coding downstream 364008 6593467 ~ 6603875 (+)
tmem245 tmem245,LOC107687814,LOC107706205,LOC107723436,LOC107595951 coding downstream 377526 6606985 ~ 6641935 (+)
trnat-ugu NA coding downstream 421246 6650705 ~ 6650777 (+)
G16755 glipr2,glipr2l,LOC107706057,LOC107689891 non-coding upstream 85131 6091736 ~ 6100350 (+)
G16739 LOC108426361,LOC108256403 non-coding upstream 177433 6002303 ~ 6008048 (+)
G16736 NA non-coding upstream 228602 5955445 ~ 5956879 (+)
G16732 NA non-coding upstream 291004 5892670 ~ 5894477 (+)
G16719 NA non-coding upstream 389471 5795687 ~ 5796010 (+)
G16779 NA non-coding downstream 1806 6231265 ~ 6233096 (+)
G16799 NA non-coding downstream 128105 6357564 ~ 6360468 (+)
LOC111194764 NA non-coding downstream 186403 6415862 ~ 6438882 (+)
G16824 NA non-coding downstream 307420 6536879 ~ 6538980 (+)
G16828 NA non-coding downstream 345078 6574537 ~ 6574776 (+)
LOC103025913 NA other upstream 7597 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 1668172 4515997 ~ 4517309 (+)
nrgn NA other upstream 4014274 2150630 ~ 2171207 (+)
G15839 NA other upstream 4503459 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 4656064 1516497 ~ 1529417 (+)
G16820 NA other downstream 302937 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 1193112 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 1939380 8168839 ~ 8184837 (+)
G17414 NA other downstream 2446160 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 2661785 8891244 ~ 8899645 (+)

Expression


Co-expression Network