G60367


Basic Information

Item Value
gene id G60367
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15781299 ~ 15798959 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU68720
ATGAAATTGGCCATCACTAGATATTGTTAAAAAGTTTTTTTGTTTGTTTTTTTTGGCGCACAAAAAATATTCTCATCGCTTTATAATATTAAGGTAGAACCAATGTACTCACATGAACTAATTTAAATGTTTTTAGTATCTTTATCAATCTTGAGAGAGGACATACCATTGCTGTCTATGTAGGCTGAGCCATCGGATTTCATCAAAAATATCTTAATTCGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACAAAATTTAATTTTTGGGCGAACTAACCCTTTAAGAATGATATTCAAAACATAGTTGGAGTAGATCAAGTCCATGTGTAATGGCGCCCCCTACTATATAACAGTGAAAACATGGATTGCCAGAAAAATCCGTCAATTGCAGGGAAAGAGTTAATGCACATTCCCGGTCTTTGTATGTTTTAATCAAGAACATAATTTCTTTCTCCACCTCTGAACTTTTCTTTTAGGCTGACATTACAGATCATTAATCCCTCTTCATTACAGAAGGAAAATGGTAGCAAATGATGTTTCATGTTGACTAAGCATAAAAATGACCACAGATTTGTATTAATGTTGGGTTCTGTTGTGAAATGTGGTGCAGTTGAGGAAAACATTTATACAATGGATGTCAAAATTAAATTTACTTTTTTTCCATATACATTCTTTTCTTTTATATAAAGTGCATAATAAATACACATTTAAACGCAAACAAAAAAAAAAAAAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU68720 True 749 lncRNA 0.32 3 15781299 15798959

Neighbor

gene id symbol gene type direction distance location
CI01000009_15726357_15736168 PHGDH coding downstream 45131 15726145 ~ 15736168 (-)
CI01000009_15716557_15721525 KLHL23 coding downstream 59703 15716477 ~ 15721596 (-)
CI01000009_15693066_15694538 UGT5B4, UGT5B6 coding downstream 86670 15692994 ~ 15694629 (-)
CI01000009_15654061_15662554 ARPC2 coding downstream 118273 15653760 ~ 15663026 (-)
CI01000009_15504401_15585060 NA coding downstream 195470 15503406 ~ 15585829 (-)
CI01000009_15802365_15836680 COL28A1A coding upstream 3389 15802348 ~ 15836684 (-)
CI01000009_15847186_15853675 CCDC89 coding upstream 47959 15846918 ~ 15853675 (-)
CI01000009_15975897_15978506 RDH1 coding upstream 176771 15975730 ~ 15978506 (-)
CI01000009_15981692_15985027 DHRS9 coding upstream 182726 15981685 ~ 15985027 (-)
G60472 NA non-coding downstream 30305 15750698 ~ 15750994 (-)
G60376 NA non-coding downstream 34813 15745468 ~ 15746486 (-)
G60469 NA non-coding downstream 62138 15718562 ~ 15719161 (-)
G60468 NA non-coding downstream 69152 15708004 ~ 15712147 (-)
G60479 NA non-coding upstream 3928 15802887 ~ 15803791 (-)
CI01000009_15318811_15390382 TNS1 other downstream 338252 15318811 ~ 15390382 (-)
G59941 NA other downstream 648796 15132104 ~ 15132503 (-)
G59811 NA other downstream 893835 14862397 ~ 14887464 (-)
G59490 NA other downstream 1743426 14033564 ~ 14037873 (-)

Expression


Co-expression Network