LOC103021367


Basic Information

Item Value
gene id LOC103021367
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8932684 ~ 8974038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680054.1
AGTGCTTGGATATTCCGACCagcaagaaaaaagagaagtggAATTAAAACAGGTTGTGATAGTTTTCAGAgtggaagaaagagagactTGAGTTTAAATGAGAAACTGAGGACAAACAGAGAACCTGTCTGACTTCTGAGTAAATATTCTAGGATCGGTGAAGCTGCGGGTGAGGCGGGTGGAGAcagtagagaagtagagaactTCATTATTCTTTATGGACTGTTTTTCCTGGTTGGATCATGGGAAGAGTTGTGCTGTCGGTGGTTCTGTGTCACTGCATGGTTCTCGTGTGGgcAAAACTAATTCAACTATATCTTCAACCTCCATCCCTACCATCACAACAGGAGCACCAACTACTCCTGCACctcCATCCAGTGTAACTGATGTATGGGTAAAGAGTCGCACTGAGACTGGGTTAACATTACAATGGAACAAAGTGAACAACAGCAGCAGTTACAGTTACAGACTGAACTACAATGGAAAAACGCCAATCATCAATGGATCAGCTCTTGGAGATAATGTAGTGACACACAACATCTCATCTCTTTCTCCTGGAACTAAATACAGCTTCACTCTCTACACTGTATTTGAAGGAGTGGAGAGCAGTGGATTTAACTTTACCAATGTCACCActcCATCCAGTGTAACCGATGTATGGGTAAAGAGTCGCACTGAGACTGGGTTAACATTACAATGGAACAAAGTGAACAACAGCAGCAGTTACAGTTACAGACTGAACTACAATGGAATAAACGACATCATCAATGGATCAGCTCTTGGAGATAATGTAGTGACACACAACATCTCATCTCTTTCTCCTGGAACTAAATACAGCTTTACTCTCTACACTGTATTTGAAGGAGTGGAGAGCAGTGGATTTAACTTTACCAATGTCACCActCCATCCACTGTTACCCATGTATTGGTAAAGAGTCGTACTGAGACTGAGTTGATACTGGAATGGGACAAAGTGAACAACAGCAGCAGTTACAGTTACAGACTGATCTACGATGGAAAAAACGACATAATCAATGGATCAGATTTTGGAAATAATGTAGTGAACCACACAGTCTCATCTCTTTCTCCTGGAACTAAATACACCTTCACTCTCTACACTGTATTTGAAGGAGTGGAGAGCAGTGGATTTAACTTTACCAATGTCACCACTCCATCCAGTGTAACCGATGTATGGGTAAAGAGTCGTACTGAGACTGAGTTAATATTAGAATGGAACAAAGTGAACAACATTGACAATTACAGTTACAGACTGATCTACAATATAATGAACATTACCATCAATGGATCAGATTTCGAAAATGATACAGTAACAAGAAACATCTCATCTCTTTCTCCTGGAACTAAATACACCTTCACTCTCTACACTGTATTTGAAGAAGTGGAGAGCAGTGGATTTAACTTTACCAATGTCAccaCTCCATCCAGTGTAAACAGTATATCTGTAAAGAGTCGCTCTGAGAATGGGTTAACATTACAATGGAACAAAGTGAACAACAGcaacagttacagttacagacTGAACTATGATGGAATAAACATCACCATCAATGGATCAGAGGGAGGATCTGTAGTGAACTACACAGTCTCATCTCTTTCTCCTGGAACTAAATACACCTTCACTCTCTACACTGTATTTGAAGGAGTGGAGAGCAGTGGATTTAACTTTACCAATGTCACCActcCATCCATTGTAACTAGTGTATCTGTAAAGAGTCGCACTGAGACTTGGTTAATATTGGAATGGAACAAAGTGAACAACAGCAGCAGTTACAGTTACAGACTGAACTACAATGAAATAAACAACACCATCAATGGATCAGATTTTGCAAATAATGTAGTGACACACAACATCTCATCTCTTTCTGCTGGAACTAAATACAGCTTCACATTCTACACTGTATTTGAAGGAGTGGAGAGCAGTGGATTTAACTTTACCAATGTCACCAcTCCATCCAGTGTTAACAGTGTAACTGTAAAGAGTCGCACTGAGACTGAGTTAATATTGGAATGGAACAAAGTGAACAACATTGACAGTTACAGACTGAACAACGACAGAACATATCGTATCAACCGTGGATCAGAGGTTGGAGATAATGTAGTGACACAAACAGTCTCAGGTCTTTCTCCTGGAACTAAATACAACTTCACTCTCTACACTGTATTTGAAGGAGTGGAGAGCAGTGGATTTAATTTTACCAGTATTACCAtTCCAGCTACTGTAACTGGTCTGGGCTGTAAATATGCATCTGGAGGATATGGTCTAACTGTGTTTTGGGATCCTCCTGTTGGGGAGAGGACAGGTGTAAAGGTTGATGGAAATGGACAGAGTTTAAATGCGAGTGGAGAAAGTCTGTCTATAGGGGGACTACAACCTGCACAGTGGTACACCCTGACTGTGACTGCCCTCTCTTGGGATTTACAGAGTAACTCAGCCTCAGTTACCTGTCAGACTGATCCTGGAGGAGTCATAGCAGGCGTTCTGGTATTCCTATTGTTGGTCATCATCCTTTGTGTTGGTATCTTTATATGGCGGCGCAAACGAGCTCTTCCCAGTGTCTTTGGGAATTCAAAATCTAAATCTGTAGAGCACAACCTACCAAGTGATAAATACAAgCCAATTCCTCTAAAAAAGTTTCCAGAACATTTCATTTCACTGAGCCGTGATGATAATCGTGGTTTCAGTGTGGAATATGAGGATTTAGGCACAGTGGGTACAGATCAGAGCCGTGCAGCAGCTCTATTCCCAGAAAATAAGAGCAAGAACCGATTCACCAATGTACTAGCCTATGATTTATCTCGTGTAAAGCTCACTCAACAGGACGGTCCTGATTCTGACTATATCAATGCAAACTACATGCCTgggTACAATAGAAACAGCAGGCAGTACATAGCTGCTCAGGGTCCACTCCCCTGCACCATCAGCGACTTCTGGAGAATGGTGTGGGAGCAGAAGTCTACAGCTATTGTCATGCTGACCAACTGTGTGGAGAATGGACGGccCAAATGTGAACAGTACTGGCCGCTGGATTACACTCCCTGCATCTATGGGAATCTGCTGGTGACTATTCAGTCAGAGCACAAAGAAAAAAGCTGGACTCTGCGAGAGTTTGTTGTTAGAAATaAAGACACTTCTGAAGAACGGACAGTGATGCATTTCCATTTCACAGCCTGGCCTGACCATGGAGTTCCCGCAGGAACAGATGAGTTAATCCAGTTCAGAGAGCTCGTGCGGCATCACATAGAGAGGTTCCCAACCTCAGGACCCACAGTAGTGCACTGCAGTGCTGGAGTGGGCAGGACAGGCACTCTGATTGCTCTGGATACATTACTACAGCAGCTGGTAAAAGAAGAAGCGGTCAACATTGCTGCCTGTGTGCATCACATGAGGCTTAACCGGCCTCTCATGGTGCAGACTGAGTCTCAGTATGTGTTCCTGCACCAGTGCATCATGGATTCTCTGCAGCCCAAGGAGGACTTCATCCCGGAGCCTATATATGAAAATTCAGATATGATCTATGCAAACTCTATGGTCTTAAGACAGTGTAGTGGAAACAGCCCTGTTTAAATACATCCACGAGAATCATTGTTGGCTTACAGTAAGCAATGGCTTTTTATTTTCCACATATTTAGCTTCCCAGATCCATACATTCTATTCTAAATATTATACTAATATCCACCAACTGGAACTGTGATCATTCTGTtggtcaaaataaaaacatttttcagcTTTTGTGCTTTTAACGAAAGCTACAATCATTCTAATATCTTAAAGtg

Function

GO: NA

KEGG:

id description
K18034 PTPRH, SAP1; receptor-type tyrosine-protein phosphatase H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680054.1 True 3795 mRNA 0.42 21 8932684 8974038

Neighbor

gene id symbol gene type direction distance location
LOC111191981 NA coding upstream 10953 8904081 ~ 8921731 (+)
LOC111191975 NA coding upstream 30430 8900225 ~ 8902254 (+)
LOC103030535 NA coding upstream 43289 8879585 ~ 8889395 (+)
LOC103030220 rpgrip1,LOC107664673,LOC107742250,LOC107550023 coding upstream 63966 8844498 ~ 8868718 (+)
LOC103031465 NA coding upstream 89802 8834542 ~ 8842882 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding downstream 6966 8981004 ~ 9005830 (+)
bmp6 bmp6 coding downstream 35208 9009246 ~ 9068931 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding downstream 145366 9119404 ~ 9132136 (+)
LOC103030214 NA coding downstream 337752 9311790 ~ 9482091 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding downstream 846923 9820961 ~ 9836628 (+)
LOC111194870 NA non-coding upstream 924 8928692 ~ 8931760 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding upstream 55558 8872932 ~ 8877126 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding upstream 158921 8771847 ~ 8773763 (+)
G17421 NA non-coding upstream 183050 8746869 ~ 8749634 (+)
LOC111194833 NA non-coding upstream 215887 8715728 ~ 8716797 (+)
LOC111194882 NA non-coding downstream 99456 9073494 ~ 9074499 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding downstream 108050 9082088 ~ 9084442 (+)
G17496 NA non-coding downstream 229351 9203389 ~ 9215506 (+)
G17632 NA non-coding downstream 508364 9482402 ~ 9482708 (+)
G17637 NA non-coding downstream 588390 9562428 ~ 9562725 (+)
LOC111191978 NA other upstream 28680 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 33039 8891244 ~ 8899645 (+)
G17414 NA other upstream 215897 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 747847 8168839 ~ 8184837 (+)
LOC103032995 NA other upstream 1503293 7422571 ~ 7429391 (+)
G17745 NA other downstream 1307186 10281224 ~ 10281976 (+)
G17904 abr other downstream 2203870 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 3993525 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 4070793 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 4122672 13096710 ~ 13128508 (+)

Expression


Co-expression Network