bmp6 (bmp6)


Basic Information

Item Value
gene id bmp6
gene name bmp6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9009246 ~ 9068931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680109.1
CTCTGCTTCTATGCCCAGTTCTCCCAGTGTGACAGGCTTCGGCGTGGACAGCTCATGTGGAAGCTCTTCTATGAGGACTCGGACTGAAGTAAAGTccacttctgtggcacgaactTATGGGAATACCAGTGTCTTGTCTTTCTGAGAACTAAAGCGTGCGCCTTCCGACGTTtcgtgttttgtttttggtgttTTCCCTTTGAGACAAACCATTACGTGGAATTAATGGAGATTTTCCTAAACAAACCATCTTATGCTTTGAAGCGCGTCCCCGATGATCTGGTACGGGACACTGTCTCTGATGGCGTGACTTCTGTTGCTTCCGCGAGCCCGTTTTATCCTAGAGGACGGTACAATCGTGCGCCTCAGTAGTGTCTACACTTGCGCGCGCTCCGTGTCCACAGGATTTGTACCATTTTTGTCGTagttgtttattgtttgttgtgtaagtttttttttttttttggaaagtccACAACTGCATCATCCTCCCAACAAACTGGATCTAAGATGAGAAGCCACCGCTTTGCTCTGGCGGGCTTATGGTGGTGCTCTTATTGCATGTTCCTCGTGCATGCTGGTAGCGCTCATTTATTCGACAGCAACAACGAGCTTCACCCGCACCGGCGGCTGCGCACGCACGAGAAGCGAGAGATGCAGAAGGAGATCCTCTCCATCCTCGGGCTGCCGCACAGACCCAGACCTCACCCGCTCAACGGCAAGTACAACTCAGCGCCGCTTTTCATGCTGGACCTGTACAACACCATGAACACCGAGGAGAGGAACGAAGTGGACGGGATCCTGGACCAGTACAAGTCCATGTTCACCACGCAAGGACCTCCTTTAGCCACTTTTCAAGACAATGCCTACTTGAATGACGCCGACATGGTGATGAGCTTTGTCAATCTGGTGGAGTTTGAGCGGGAGTTGTCTCCGCACAGAAGACACCATAAAGAGTTCAAGTTCAACTTGTCTCAGATCCCAGAGGGAGAGGCAGTTACAGCAGCAGAGTTCAGGATCTACAAGGAATGTGTGAGCAGCACTTTCCGCAACGAGACCTTCCTGCTCAGTGTCTTCCAGGTGGTGGGAGAACATCCAGACAGAGAAGCAGATCTGTTTCTGTTGGAGTCCCGCCAGCTGTGGGCAGCAGAGGAAGGCTGGCTGGAGTTTGACATCACAGCCACCAGTAACCTGTGGGTAATGAGCCCCCATCACAACCTGGGTCTGCAGATCAGTGTAGAGACCAGCAGTGGGCAGAACATTAACCCCAGAGAAGCCGGGCTAGTGGGCCGGGATGGAGCTCTGGAGCGGCAGCCATTCATGGTAGCCTTCTTCAAGGTGAGCGAGGTCCATGTTCGCACGGCACGCTCCCCAGAAAAAAGGCAGAAAAGCAGGCAGCAGAACCGCAGCCGCTCAAATCATCCACAGGAGGCACCCAGGGGCCCCGGACACACAGATTACAACAGCAGTGATCAGAAGACGGCATGCAGAAAGCATGAACTATATGTTAGCTTCAGAGAGCTGGGCTGGCAGGACTGGATCATTGCACCTGAAGGCTACGCTGCCAACTACTGTGATGGCGAATGCTCCTTTCCACTGAATGCTCACATGAACGCCACCAACCACGCTATTGTACAGACACTGGTCCACCTGATGAATCCTGAGAACGTCCCGAAGCCTTGCTGTGCCCCCACCAAGCTGCACGCCATCTCTGTGCTCTATTTCGACGACAACTCCAACGTCATCCTGAAGAAGTATAAGAACATGGTGGTGCGTGCCTGCGGCTGCCACTGACCTCCAGGACGTCACGCTAGCTTACCCCCTCTTTACCCCCTgcccagcggctgcagctcggtgtgtgtgtgtgtgtgtgtgtgtgggacgtGTGAGACAGAGGacggagagagagtgtgtgtgtggtgtgtgtgtgtgtgtattaaagaAAGGTTTGTAGTGTGAAAGTTCAAATTCTAGTATAGATATATTGAGTGGATGGGTGTTTGTGTAggtatgtgtgtgcgtatgcATTATCCCTCTCTTCGACCTGGCTGTACTGGATGTGGGATTATTAAGGACTGTGTGAGGAATGTGCTGCTTTCCCCCCCTCTTTCCTGTTCACACACAGTCAGTTCTCGTGTACCGGTTCCTAATCCTGCTAAGTCCGGAAAGTATGTACAGCCACATCTGAACACAGAGCCAGTGCCTTAACCAGTGAACTGTCACTGAAAACCTATTATCCAAGATCCATTCTATATTTTATAAAggtatttattctgtatttgaCTAACCAaagcttgatttttttattttaacatctcAGACTGTCGAAACCTAATCATGCCCTGATACAGCCACATCATAGCACAGAAATGGagatctatttttattttcccagTTTTTATACAGTTGCTGTATGCTGTACTGCCGTCCAAAAATACAACAGCTGAACCTGGTTGAACTCTTTTAGGGGTCTTAATAAAACAGcttatttttattctctcaA

Function

symbol description
bmp6 Predicted to enable BMP receptor binding activity and cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including choroidal fissure; ectoderm; epidermis; fin; and ventral mesoderm. Orthologous to human BMP6 (bone morphogenetic protein 6).

NR:

description
bone morphogenetic protein 6

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K16620 BMP6; bone morphogenetic protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680109.1 True 2503 mRNA 0.50 7 9009246 9068931

Neighbor

gene id symbol gene type direction distance location
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding upstream 3416 8981004 ~ 9005830 (+)
LOC103021367 NA coding upstream 35208 8932684 ~ 8974038 (+)
LOC111191981 NA coding upstream 87515 8904081 ~ 8921731 (+)
LOC111191975 NA coding upstream 106992 8900225 ~ 8902254 (+)
LOC103030535 NA coding upstream 119851 8879585 ~ 8889395 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding downstream 50473 9119404 ~ 9132136 (+)
LOC103030214 NA coding downstream 242859 9311790 ~ 9482091 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding downstream 752030 9820961 ~ 9836628 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding downstream 868830 9937761 ~ 9954129 (+)
LOC103024812 NA coding downstream 911675 9980606 ~ 9989518 (+)
LOC111194870 NA non-coding upstream 77486 8928692 ~ 8931760 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding upstream 132120 8872932 ~ 8877126 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding upstream 235483 8771847 ~ 8773763 (+)
G17421 NA non-coding upstream 259612 8746869 ~ 8749634 (+)
LOC111194833 NA non-coding upstream 292449 8715728 ~ 8716797 (+)
LOC111194882 NA non-coding downstream 4563 9073494 ~ 9074499 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding downstream 13157 9082088 ~ 9084442 (+)
G17496 NA non-coding downstream 134458 9203389 ~ 9215506 (+)
G17632 NA non-coding downstream 413471 9482402 ~ 9482708 (+)
G17637 NA non-coding downstream 493497 9562428 ~ 9562725 (+)
G17443 NA other upstream 59087 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 105242 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 109601 8891244 ~ 8899645 (+)
G17414 NA other upstream 292459 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 824409 8168839 ~ 8184837 (+)
G17745 NA other downstream 1212293 10281224 ~ 10281976 (+)
G17904 abr other downstream 2108977 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 3898632 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 3975900 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 4027779 13096710 ~ 13128508 (+)

Expression


Co-expression Network