txndc5 (txndc5,LOC107730007)


Basic Information

Item Value
gene id txndc5
gene name txndc5,LOC107730007
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9071382 ~ 9084286 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680116.1
GTGCTTTGTCTTGTACAGGTGTGGTCATTGCCAGAGGCTACAGGGAACATGGAATGAGCTGGCAGACAAATACAACAGTATGGAGACTCCTCCCATCTATGTTGTAAAAGTAGATTGCACTAAGGACACCAAGTTTTGCTCCAGTGACCATGGGATCCGTGGATATCCTACtCTGAAGCTGTTTAAACCTGAGCAGGAGGCAGTGAAATATCAGGGTTCAAGGGACCTGCAGTCACTGGAGACCTGGATGCTGAAAACTCTACAGGAGGAGCCTGAGGAGCCTGAAAGTGAGCCCGAGCCCCCCAAAGTGCCTGAGCCCAAGCATGGCATGTACGAGCTTACTGCTGGCAACTTTAAATCACATATTTCCAAAGGATCTCACTTTGTGAAGTTCTTTGCGCCGTGGTGCGGACACTGCAAAGCTATGGCTCCAACATGGGAGCAGCTGGCTACCAGCTTTGAACACTCAGATTTGGTCAAAATTGGCAAGCTGGACTGCACTCAGCATTATGAAGTCTGTTCAGAGAACCAGGTTCGAGGATACCCCACACTGCTCTTCTTCACTGACGGAGAGAAGgtgGATCAGTTCAGGGGAAAACGTGATCTGGAGTCTTTTAAGGAATTTGTGGATAATCACTTGGCTGATGCAGCTTCCAAAGACCAACCTGCTGCAGAGGATGCAAAAGCCAATGAAATCCCAGAGGCTGAGGAGCCTGCTAAACCAGAGTCCAGCGTTGTCACCCTCACTGAGAGCAACTTCGATGACATTGTTGCCAAAGGCGTCTCCTTCATTAAGTTTTATGCTCCATGgtgtggacactgtaagaacCTGGCTCCTACATGGGAGGACCTGTCAAAGAAGGAGTTTCCTGGCTTGACGGACGTGAAGATTGCTAAAGTGGACTGCACTGTTGAGAGATCGCTCTGCAACAGATTCTCAGTGCAGGGATACCCGACGCTGCTGATATTCCGCGCTGGTAAGCAGGGAGAGGAGCACAACGGTGGCCGGGACTTGGAGAGCCTGCACAGCTTCGTCATGAAGCAGGCCAGAGATGAGCTGTAGTTTTGAGCCACATCCACCTTCATTACACTCTGTCCCCTGCTCTGATGTCTCTCTGATCTTTTCCCCTGTGTTTTTCCTCAGCAATGTGCGCATGTGTCTCCATCTATGTAAACTCTCGCCAAAAGTCTAGAGTGAGGGCAATCACTGAGATTTATCTATATGTAAAATGTGAATGTAGGTGATTGCAGTAAAGTCCTTTACCACCTATGGACCAATGAGAGGAAATGGTACCTAATGACTGACAACCACTTTTCCAGTTATAAaaatgttcatatatatatatttttctttcctttatttgttttgtttttctgtctgtcaaCACAGTATGTCAGTGTCTATTATAGTCTTTTCTTTTtgaacatgttataaacacagaaatagaGATTATTGCACCATGTATGAGTGGAGAAATTTTATAACAAGGAATTATCCGATGCTTTTTAAGGCCAACGGTTTGGCCATCATGTTTACAGTGCCCGGAAAGACAGCCCggtttatttttgctgtaaaaAGAGAATCATGTGACTTGGCTCTCAgggagaacatttttttaaatatataaagttaaaATCATATGTTCCTCCTTTCTGCCTTTTCTCGTCTTCTCCTACACCACCACCTCAACCCTCTGTTTAAAATCTGTTGGACTCTGTATGAGAGAACTGCACTTtttttgtgtgcgtgtgcatgtgtgtacgtttcagtgtgtttttgcatcGTAAGCAATCATTTTCCACCAGTTTCACACATTTACACTTTGGGGCCTGTAGCacttaatattgtaataattgtTCATTAAAGTAATAATCCCAGAAATATAACAAATGAAACCATGCAAAAAGTAATACAACGGAATATTGGAATAATGTGCCTAattatgttttacagtgtattgaagattatacatttttcagtttgaccgttattcaattttttttcatttgtgggTTTTATACAATtagtgttaaaatataaaatatttgggATTATTACTTTACAGTGGGTTGAGGTTCCTGGGAGTCCTCtattgggataaaaaaaaacatctttttcaaATGAAATTTCACAATAAGCATGTACTCTCTATTTGAAATAGGttgattt

Function

symbol description
txndc5 Predicted to enable protein disulfide isomerase activity. Predicted to be involved in apoptotic cell clearance. Predicted to be located in endoplasmic reticulum lumen. Orthologous to human TXNDC5 (thioredoxin domain containing 5).

NR:

description
thioredoxin domain-containing protein 5

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K13984 TXNDC5, ERP46; thioredoxin domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680116.1 True 2170 mRNA 0.42 9 9071382 9084286

Neighbor

gene id symbol gene type direction distance location
LOC103047134 LOC103047134 coding downstream 91764 8975458 ~ 8979618 (-)
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding downstream 194257 8873882 ~ 8877125 (-)
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding downstream 239461 8813024 ~ 8831921 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding downstream 295135 8746885 ~ 8776247 (-)
LOC103037764 laptm4b,LOC103037764,LOC108414450,LOC106579220,LOC106605533 coding downstream 414508 8645276 ~ 8656874 (-)
bloc1s5 bloc1s5 coding upstream 24728 9109014 ~ 9113905 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding upstream 986792 10071078 ~ 10078582 (-)
elovl2 elovl2,LOC101268971 coding upstream 1018893 10103179 ~ 10118608 (-)
mppe1 mppe1 coding upstream 1147227 10231513 ~ 10257873 (-)
LOC103028097 tnip3 coding upstream 1183372 10267658 ~ 10278333 (-)
G17585 NA non-coding downstream 85728 8984361 ~ 8985654 (-)
G17558 NA non-coding downstream 110542 8911970 ~ 8960840 (-)
G17536 NA non-coding downstream 259903 8793865 ~ 8811479 (-)
G17532 NA non-coding downstream 283095 8746380 ~ 8788287 (-)
G17514 NA non-coding downstream 398205 8668990 ~ 8673177 (-)
G17599 NA non-coding upstream 20278 9104564 ~ 9108428 (-)
G17640 NA non-coding upstream 478765 9563051 ~ 9563268 (-)
G17646 NA non-coding upstream 518501 9602787 ~ 9603419 (-)
G17648 NA non-coding upstream 520630 9604916 ~ 9605232 (-)
G17661 NA non-coding upstream 729425 9813711 ~ 9814683 (-)
LOC111188216 NA other downstream 185065 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 1063762 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2527107 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2708377 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2961099 6105816 ~ 6110283 (-)
G17638 NA other upstream 478141 9562427 ~ 9562725 (-)
mak mak other upstream 910859 9995145 ~ 10009151 (-)
G17792 NA other upstream 1162389 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 1931743 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 1991952 11076238 ~ 11083799 (-)

Expression


Co-expression Network