bloc1s5 (bloc1s5)


Basic Information

Item Value
gene id bloc1s5
gene name bloc1s5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9109014 ~ 9113905 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680125.1
TTTGAAGCAGTTCATGTAGCCCAGACAGGAGGATACAAATTATATCAGCGCTCTTCTGAAATGTAGCTGTCTGAGTTAACAGTAAATATTACCTGATGTGACGATTATAAAGACACGTGCCACACGAAGTAACCTGGAGCAGATGATTTAGGTTCGGGTTGTCGTGGAGTTACTGGATTTTAAGGCAATAAGGGagttttttgcacaaaaaacacacagagagggTGGTGACGTCTCGTGACCATGGACAAAATAGCAAAAGATGTTGGTGATATCCAGtctagactgctggaccacagACCTGTCCTACAGGGGGAGATCAGATACTTTGTTAGAGAATTTGAGGAGAAAAGGGCATTTAGGGAGTGCCGTCTGCTGGAAAACCTAAACAAGATGGCGACTGAGACCAATGAACAAATACTGCCCAAATGCACAGAGAGCATGCAGAACAACTTATGTGACATACTGACCAGATTGGAAGCGGCCAATCATATGACACAAAGAATCCAGCAGAGGGAGCTAGAAGCCCAGAATaGCCCACAGCTGCAGGTGTGTATGGAGAGGCGTAGGGAGGACTGGGAGGAGTTCCTGAAGCAGCAGGTTCAGCTGAAGGAGGAGGTGGATGAGGAGCATCTTAAAGCCGTAGGCAGACTCAGCACTCAGTACAGCGAGATGAAGAAAGATCTCACAAAGCACTCCCACTTCTGACATCTTCCTTGTGTGTCCCAGTTAATATACTGTGCAGCATTTCAGAATTTCTGCAAGGTATATGATTCTCCTCTTATTCTGATGATGACCTCTGACATGAGGATGACGCAGGATTGGAGCTGTGTAGAAATAGTAGTGTCAGGGGACTTTTATGTGTATGATGTGGGACTGTGCAAAAGCCTACGCCTTTTGGGAAGTTGAATTCATCTCCTCTCTGATTAAGCTGCACCTCCCTGTGGACCCTGAATTTAATTTGCTCAATGATGATTCAGGATGCTACATCATGGGAGGATCCTGGGAAATATAGCTTGCTGGATTAACTGCAAGGCATCGCCCAATGTTGATAACCCTCAAAACCTATACTAAAATCTATACTTGCTCCA

Function

symbol description
bloc1s5 Predicted to be located in transport vesicle. Predicted to be part of BLOC-1 complex. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome. Orthologous to human BLOC1S5 (biogenesis of lysosomal organelles complex 1 subunit 5).

NR:

description
biogenesis of lysosome-related organelles complex 1 subunit 5

GO:

id name namespace
GO:0030133 transport vesicle cellular_component
GO:0031083 BLOC-1 complex cellular_component

KEGG:

id description
K20187 BLOC1S5; biogenesis of lysosome-related organelles complex 1 subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680125.1 True 1091 mRNA 0.45 5 9109014 9113905

Neighbor

gene id symbol gene type direction distance location
txndc5 txndc5,LOC107730007 coding downstream 24728 9071382 ~ 9084286 (-)
LOC103047134 LOC103047134 coding downstream 129396 8975458 ~ 8979618 (-)
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding downstream 231889 8873882 ~ 8877125 (-)
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding downstream 277093 8813024 ~ 8831921 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding downstream 332767 8746885 ~ 8776247 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding upstream 957173 10071078 ~ 10078582 (-)
elovl2 elovl2,LOC101268971 coding upstream 989274 10103179 ~ 10118608 (-)
mppe1 mppe1 coding upstream 1117608 10231513 ~ 10257873 (-)
LOC103028097 tnip3 coding upstream 1153753 10267658 ~ 10278333 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding upstream 1215185 10329090 ~ 10340189 (-)
G17599 NA non-coding downstream 586 9104564 ~ 9108428 (-)
G17585 NA non-coding downstream 123360 8984361 ~ 8985654 (-)
G17558 NA non-coding downstream 148174 8911970 ~ 8960840 (-)
G17536 NA non-coding downstream 297535 8793865 ~ 8811479 (-)
G17532 NA non-coding downstream 320727 8746380 ~ 8788287 (-)
G17640 NA non-coding upstream 449146 9563051 ~ 9563268 (-)
G17646 NA non-coding upstream 488882 9602787 ~ 9603419 (-)
G17648 NA non-coding upstream 491011 9604916 ~ 9605232 (-)
G17661 NA non-coding upstream 699806 9813711 ~ 9814683 (-)
G17663 LOC107746320 non-coding upstream 701024 9814929 ~ 9818329 (-)
LOC111188216 NA other downstream 222697 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 1101394 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2564739 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2746009 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2998731 6105816 ~ 6110283 (-)
G17638 NA other upstream 448522 9562427 ~ 9562725 (-)
mak mak other upstream 881240 9995145 ~ 10009151 (-)
G17792 NA other upstream 1132770 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 1902124 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 1962333 11076238 ~ 11083799 (-)

Expression


Co-expression Network