LOC103044085 (LOC105902693,LOC107570661)


Basic Information

Item Value
gene id LOC103044085
gene name LOC105902693,LOC107570661
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10517421 ~ 10805698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680284.1
GCTCCCCTCCTCAATCCACCAGCATGAACACTTTGCCTTGCACTTGTCGCCTGAGCGCGCGGTCTTTACGCATCTTCTCCGTTGCGCGCGCCACAGGATTACCGGTGTCCGCTCCTGCGgggttttaactgttttaactgCCCTGTTTCCTCTGATTTCCCTGCTCTCTGGTGAGCACAGTTGGTCTGCGGTGAAGTCTGGAGCTGCGTTACGCGCGTAACTTTTTGTTGGTGCGTCTCGCGCGTCCTCGCCTCCAAACGCGGATCAGCGACACGAGCGGCGCGTGCGACCGCGCGAGGTGCCGGTTCCTTCTCCTGATCCCATGAAGACAGGCTTTACTCCATGACCCCAGTTCTTCTGGCCCTAAAGCGAGCCTCATTGTTCTTCAGAGCCCAAGGAATTTCATCACTTTAAGTCACACCAGCAACACCAGAAACAACTGCAGCGCAAAAAACTGCACAGGTCTGCGTTTTTCCTCCCTCGCTCTTACTTTTTCAATGACTACGTTTTTcctactttttcactttttcactctGCTCAGTTGAACGGCGACAACTCCGCACCGAGAGCCCGgacttttgtacttttgtagACTTTCTCCatcaacttttttcttttttttttaacgggGCCCCTCCAGATGTCCAGTTGTGGCCCCCTCATGTCTTATATCATTCGGCTTGTCATCCTCCTGCTCCCCCTAGTAGACCCGGGTTGCGGGGAGCTGAGCTCCAGGGTTGGGGCCACAACAACTCCGCCACAAAAGGTCTCTGAAAGCCCTTTGGAAAACCTGCAACGGCAGAAAAGGAACTGGGTGTGGAATCAGTTCTTTGTACTGGAGGAGTATACCGGCACTGACCCGCTTTACGTCGGCAAGCTCCACTCAGATGTGGATAAGGGTGATGGAAACGTGAAGTATGTCTTGACCGGCGAGGGCGCGTCCTCCATCTTCACCATCGACGAGAACACAGGGGACATCCACGCTACCAAACGTCTGGACCGAGAGGAACAGGGATACTACACCCTGCGGGCGCAAGCCGTGGACCGCGAGACCAACATCCCAGTGGAGGCGGAGTCGGAGTTCATCGTTAAGGTGCAGGACATCAACGACAATGAACCCAAGTTTCCAGATGGACCGTATATTGCTGGAGTGCCTGAGATGTCTCCTCTTGGCACCACGGTGGTCCAGGTGGCGGCGACGGACGCAGATGACCCCACATATGGCCACAGTGCCAGAGTGGTGTACAGCATCATCCACGGGCAGCCGTACTTCTCTGTGGAGCCCAAAACAGGAATCGTACGGACAGCCCTGCCTAACATGGACCGCGAGACACGAGACCAGTACGTGTTGGTCATCCAGGCCAAGGACATGATGGGTCAGATGGGTGGCCTGTCAGGCACTACCTCAGTAACGGTCACGCTGACGGACGTCAATGACAACCCGCCGCGTTTCTCTCGCAaGATATATCAGTATTCTGTGCTGGAGTCTGTACCCGTGGCATCTGTGGTGGCCAGACTGAAGGCGGCAGATGCAGATATTGGATCTAATGCAGAGATGGACTACCGTATAGTGGACGGAGACGGACCCGGCATGTTCAACATCACCACAGACGAGGAGACGCAAGAGGGAATCATCATTCTACAGAAGCCTCTGGACTATGAAACCAAGAACACGTTCTCTCTGAGAATCGAGGCCACCAACCGGAACATCGACCCCCAGTTCCTGACCTATGGCCCGTTCAGTGACGTCACAGCCATAAAGGTTATAGTGGAAGATGTAAACGAGCCACCAGTCTTCAGCAATCCAGTCTATAAGATGACCGTGTCTGAAGCCGCCAAGGTGGGCGACATCATCGGTACAGTCACAGCTCACGACCCTGATACTGCCAACAGTGtgatcaggtactCTATAGACCGGAACACAGATCTGGAGCGCTACTTTAACGTGGATGCTACGTCTGGAATCATCAGCACGGCCAAGCCTCTGGACCGAGAGATCAACTCAGTCCACAACATCACCATCTTCGCCATGGAAAGCCaGGATCCATCTCAGGTGGGAAAAGGCATAGCCATCATCACCGTGATGGACATCAATGACAACGCTCCAGTCTTCGCTATTGAATATGAGACACGGGTGTGTGAAAATGCACCACCTGGGAAGGTGATCCAGACCATCAGCGCCGTGGATAAAGACGAGCCTCCCAGTGGCCATCGCTTCTACTTTTCCCTCGCTCTGCCTGCTGGCAGCAACCACAACTTCACCCTGAGAGACAACAGAGATAACACGGCGTCGGTGTTGACGAAGCGGGCCGGGTTCCGCAGGAGAGAGCAGGCTATGTACCAGCTGCCCGTGCTGATCGTGGACAGCGGTAGTCCGGCGCTCAGCAGCACTAACACACTGTTTGTACGTGTGTGTGACTGCGACGGAGACGGCGTACCCCAGGCCTGCGGGGCCGTGGCTTACACACTTCCTGCAGGACTCAGCACTGGGGCTCTGATGGCCATCCTGGGCTGCATCTTCACACTGCTGGtgCTTGTCCTGCTGATTGTGACAGTGCGGCGCCGCAGGAAGGAGCCTCTGATCCTGGAGGACGAGCGAGACGTGCGGGAGAACATCGTCCGCTACGACGACGAAGGTGGCGGCGAGGAGGACACGGAGGCTTTTGACATGGTCGCCCTGCGCAACCTCAACATCATGCGCGACCCCAAGGTGCGCCGGGACGTCACCCCAGAGACCCCGACCTTCTTCTCCTACCCGCACTCCACGGCCTCCAGGGCGGCGTACAAGACGCTCCCGGATAACGTGCTGTTCCGGGAGTTTATCTGGGACCGCCTGAAGGAGGCCGACGTCGACCCGACAGCGCCGCCGTACGATTCGCTGCAGACCTACGCCTTTGAGGGCAACGGTTCAGTGGCGGAATCGCTTAGCTCGCTCGAATCTCTGAGCTCGGACTCAGAACAGAGCTACGACTACCTCAGCAACTGGGGGCCACGCTTCAAAAAACTGGCAGACCTGTACGGCACCATGGACAGCAGCAGCAATGTTTTTTCgtagccttgtttttttttttgtggcgaACTCGCAaagaatgaaactaaaacatgaCTTGAGAAGAAAAGTCGTACAAGAGGAGTTTTAAGGGAGCGATAGGGTGAGGCCGAGAACCTGGGTTTCAAACTACTACTAAAAGCATTTGATAGCTTTAACATGACGAATGTTTGATAGAACAAACTTCTTGAAGGTCTCTTTTCAGCTCTGGAGAACGAGGCAGAGTCTCTGGGTTTAGATCAGTGTATGATGggtaaaaatcctaaaaaataaaaaataaaaaactacatTTGAGATTAGGAGTTTGTTTACATGTTTAGGGTTTCAAGTAGTGTGACTTTAATGAGGCTCAAATGCTGTGATCTGCCAGACAGGGGGGAAAGCTTTGAGGGAAAGacttaaaaaaagactaaaaataaataaataaataaataaaacattttgacacCAGGCTTCTGGCCAGCCACAGCCACAAAACTCCTGTAGTTCTGATGATGGGGACTTGATCTTCTCATCTTGTTGTCACATGGTTAAACAAGCCCTGGAACTTTCTACAGATCTGAGCTAAGAACTCTGGGACACTttgtctatttaaaaaaaagtgctctgtcTTTGAATTATCGACTTGACTCAACTTTCGTTGTGTGTGAGCTTCAACAAGAGccttggtgttttttttgtttttttgttttttttttctctgttttacgAACTTTTTTCACGGAAACCTGAATGTGTGAAGAGAAATCCTTCCTTCATTCATTCAGTTTGGACAGTGACCTTACTTTTGGTTTTGTTCctctactacttctactacttctgcttcttctttagTTCTGTTTGTGAATACACAGATGACATAATGCTGATAGTCTGCCGTAGATCTGGTTTGATGCTCGGTGGTGAGGTGGTTCGGTGTTCTACAGACGTGACAGTGTGGTTTTTTGAAGTTCCGAGTTTCGTTTAGCTGTTCTAAATGTCATGAAGTGTAAAATGAAGCCAGTGAAGCCAGTGGTTAAGGCTTCTTTGATTTGAGTGGGAACGATTCACAACTTTCAGAAACAAGTTCCTTTCGTTTTGTTTTGGCACACCGTTTCCCTTTTCCTACATTTGTATAAGAATGACACCTCGCTTACTCTTCAAAAGAGATCCTTCGAGGTATTTTCTTACGTATCGTTAAATACGACAAAGCTATTTATGACGCTGCCACCTCTGAAAGAAATGCCTAGTTGTGAAGATCTAGCGCTCTGAGAAAGTGGGTTTTCTGAAGGAGAGCAGCATAGCGTAGCTGCTATTGAAATACCTCCTTCAGCCCGAGTGAAATCAAGGACAGTCACTGCATATGTTGTTTATTGATGAGGATGAAGAAAGAAATAAGACACAGATGCAACAATATTAAAGTGAAGgtaaagaaacacagagagagaaagagagagaaagagagagaaagagagagagtcctTGAggtcaaaatgaatgaaaatataaaatgaaatgcCTTTTTTTAGCTGTTGCTACTGAACTTTGACGTGTTATAATTGAATCGAaccttttctttaatttattctttttcaACACCAGAGGAAAATAAAGAATGTGACGAATGTTCATAatct

Function

NR:

description
PREDICTED: cadherin-7-like

GO: NA

KEGG:

id description
K06799 CDH7; cadherin 7, type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680284.1 True 4665 mRNA 0.50 12 10517421 10805698

Neighbor

gene id symbol gene type direction distance location
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding upstream 167373 10340494 ~ 10350048 (+)
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding upstream 290089 10144084 ~ 10227332 (+)
sycp2l NA coding upstream 416014 10080591 ~ 10101407 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 522381 9991406 ~ 9995040 (+)
LOC103024812 NA coding upstream 527903 9980606 ~ 9989518 (+)
c3h11orf54 cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814 coding downstream 583226 11388924 ~ 11394347 (+)
spata22 NA coding downstream 591189 11396887 ~ 11401496 (+)
LOC111194924 NA coding downstream 802492 11608190 ~ 11619687 (+)
LOC103043684 snaa,napaa,LOC103043684,LOC108428316,LOC107740516,LOC107587681,LOC107681892 coding downstream 820080 11625778 ~ 11630783 (+)
LOC103041104 NA coding downstream 859456 11665154 ~ 11669150 (+)
G17832 NA non-coding upstream 57298 10459782 ~ 10460123 (+)
G17828 NA non-coding upstream 86125 10430900 ~ 10431296 (+)
G17821 NA non-coding upstream 104263 10412919 ~ 10413158 (+)
G17812 NA non-coding upstream 134452 10382697 ~ 10382969 (+)
G17751 NA non-coding upstream 187026 10310065 ~ 10330395 (+)
G17857 NA non-coding downstream 7748 10813446 ~ 10813704 (+)
G17860 NA non-coding downstream 64803 10870501 ~ 10887590 (+)
G17862 NA non-coding downstream 85356 10891054 ~ 10958128 (+)
G17877 NA non-coding downstream 178757 10984455 ~ 10984666 (+)
G17880 NA non-coding downstream 245930 11051628 ~ 11060840 (+)
G17745 NA other upstream 235445 10281224 ~ 10281976 (+)
G17443 NA other upstream 1567262 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 1613417 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 1617776 8891244 ~ 8899645 (+)
G17414 NA other upstream 1800634 8675619 ~ 8716787 (+)
G17904 abr other downstream 372210 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 2161865 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 2239133 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 2291012 13096710 ~ 13128508 (+)
G18413 LOC103047348,LOC108437052,LOC108260116 other downstream 2408950 13214648 ~ 13224093 (+)

Expression


Co-expression Network