LOC103044364 (LOC108412379)


Basic Information

Item Value
gene id LOC103044364
gene name LOC108412379
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10884853 ~ 10952099 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680293.1
AGTGTGGTTCGGACGGGGGGAGGCAGACAATACCAGCACTGTTTGTTCTCCTCGAGAAGGTATTGAGAAAGGGAGGGTGAGAAGAAGGAGGGATGGGCGAGAAAGGAGAAAGGCAGAGGTCGTCAGTGGACGGAGCTGGCCATTGTGAGCAGAGTGGGCATCAGCCTTGAACCATACTGTGCTTTTAGTCAGGGTTTTTCAGTTGTAGGCCAGTTTAGAGGTTAACAAGCTGTGGAGAgtgaagagagaggagaggtcAGAAGCTCAGGCCAGAACTTTCAGAATGAAATCCCGTGCTGCACTCTCCCCGTCAACAACCTCTTGGAATATTTCCATCACAAGAGGCTTCAGTATTCTAACTGAAGACTAACTGCTTCAGGGCTCTGACCACATCTTCTGGAAATAGGGGAGAGGAGCGGGGCAGACAGGAAGTGGTGTAACAATGGAGGGCTGTTCTGTTCTTCCAGTGGTCATCATGATCTCCATCATGCCCGGTTTGGTGGGGAGTGAGCTAAGAATGTCTAGACAAGAACTGAGAGGCAGTCAGCTGACCGAAGGCCTCGGCGTCCCCCGTCCCCGAGCCAAGCGTGGCTGGATCTGGAAACAGCTGTTTGTGGAGGAAGAGGATCCCATACCCAAAATAATCGGCCAGCTGAAATCAAACTACGACAAAGGAGACTTTACGATCAGGTACATCCTGTCTGGAGAAGGAGCAGGAGATGTGTTCCGCATCGACGAGTTCAGCGGTGAGATCCATGCTCTAAAGAGTCTGGACAGAGAAGAAAAAGCCTTCTATGTGCTCCAAGCCCACGCTATTGACCGCAGGAACGGCCAGCCAGTGGAGCCTGAGTCCGAGTTCATCATCAAAGTCCAGGATATCAATGATAATGCCCCGGAGTTCATAAACGAGCCCTACGTGTCCAGTATTCCAGAAATGAGTCCGATAGGGACCACAGTTGTCCAGGTGACAGCCACAGATGCAGATGACCCCATGTTTGGGAACAATGCCAAACTCATCTATTCCATCCTGCAAGGAGAGCCCTACTTCTCAGTGGAGCCCAAAACAGGTATAATAGTGACCTCCTGGCAGAACATGGACAGAGAAGCCAGTGAGACGTATCTGGTGGTGGTTCAAGTGAAAGACATGTTTGGATTTTCTGGAGGCTACAGCGCTACGACAACTGTGACCATCACCCTCACCGATGTCAATGATAATGGACCAACCTTCCAACACAACTTGTACACATTTGCATTAGAGGAGTCAGCACCAGTGGGCACCACGGTGGGCAGGGTCATGGCAGAAGATGCTGACATTGGAGTGAACGCCAAGATGAACTACAGTCTGGACGACCTGGAGGAGAGCGCCACCTTTAGAGTCCATACGGATCCTGAAACACAGGAGGGGATAGTGACCCTGGCTAAACCTTTAGACTATGAGAGCAAGCGCAGATTTGTCATTGCCATAGAGGCCATCAACGCCCACGTGGACACCAGATTCCTATCCTACAGTGAATTTAGTGACCGGACGATGATTAAAATCCTGGTGACGGATGTGGATGAACCTCCACTTTTCTCCGCTGAGGTTTATGAATGGAAGGTTCTGGAGAACGCACCTGTTGGAACGCAGGTTGGAACAGTCTCTGGCAGAGATACCGATGCTGCCAACAACCCTATCAGATATTCCATAACCAAGAGCAGTGACTTGAGAAAAGCCTTCCGGATTGACCCGAACAATGGGACAGTGTCAGTGGCCAAACCTTTGGACCAAGAGACAGCAGCCTGGCATAATCTCACTGTCACAGCCAAAGAAACCAagGAGAATCAGCTCTCATCCTCAGTGTTTGTCGCCATCAAAGTCCTGGACATCAATGACAACATCCCCACACTGTCCAGGGACTACCAGCCCTACGTGTGTGAGGGCACAGAGGCAGGAGAGCTGATCCAGATCATCAGTGCGGTGGATGCAGATGACCCATCGGAAGGCCACCACTTTTATTTCTCTATGTTACCAGATAAACACATCAACCCCAACTTCACCATCAGAGACAACCAAGATAACACTGCAGGTATTCTGACACGTCGGAGCTCGTTTACCCGTCGTGACCGGACACTCTATCAACTTCCAGTTGTCATAACGGACAGCGGCTCCCCCGCCCTCTCCAGCACGAGTACCCTCACTATCAGCGTGTGCTCCTGTCAGCCTGCAGGACACTGCCCATCAGGAGGGGTGGAAGCACTGGCACTGTCTATGGGCCTCAGTACACAGACACTACTGGGACTGTCTGTGTGCATCATCACACTCATAGCCCTGTCCTTATTAATGCTAGCAGTGTGGAGGCACAggaagctgcagcagcagaagtTAGCTGCTCAGGAGCTGGACACAGCGGAGTACTCTGATAGAGTGATTCTCTACACAGAGGCTAAGACTGTTGAGGACGCAGCAGCCTTCTCCACCCAGCCGGTCCCCCTGAGGCCCCACCCTCGGCGCCGTGAGCACAGACTCCGCAGGGAGGAAGTGGCCGCCAGCATACGCATGTCTCTCCGTCACTCGCATCTCATTGGCCCCGAGGATGAGGTCTTCCGGCAGTTCATCGTGGACCGTCTGTCCGAGGCCGATCAGGACCCCTACGTGCCACCCTTCGATTGCCTGCGTACGTACGCCTTCGAGGGGACGGGGTCACTAACCGGATCCCTGAGCTCACTGGAGTCCTCGACTTTTGATCCCTGCGTAAGTCGACCCCACGACCCTGGACCACGATTCTTGAGACTGAGCCCCTGGCAAGGAGCAGAGGAGGATGAGACTTCATTCTGATTCCTGAACTGAAGACAAATGATGTTTAATGTGAGTTTAGTATGTGCACTTACTGTACTTTCTGTACCTACGTTCAATtgccattttatcagaaaaaCTTACATAATATAAGCCCCACAATTCAATTCAAGAAGTCCAATTCAACCCCCTTCCTAAGTGTCCTTCAACCATACAGTGTTTCCAAGCTGTCTGGAATAGTGCAGAAAGAACCATTGCATCTTCTTAAATATCCCCGGACAgctcaacatgcttggaggagaacactaactaaCTGCTAACAGGCTCCCACATTGGCTAGCTGGTGAACTGCTGAGCACTGGGCATTAATAAAGACCCATCCTACCTATCCAAAAAGACagaatgatgataatgatactTTTTGGGTTCCTGGTAACAGATACAGCATCGCTAAGGAAGGTTTTTCAATGACAGAGCCAAAGATTCAACATTTCTGGGGGCTTTAACCACTATGTGCACTTACTGCCAACTGTATGAGAAACGTCAACCTTGATGGTAAACTTAGGTGTGTATTTAGGTtcttatatacattataaatgtacCTACAGTGTTATATAGAAGAAAAACGTTTAATAttcttgggggaaaaaaaaaaaagtttaatattatttggACTTCTGAGTCCTGAATTGTAAATTGAGTATTAGTTACAAATGCAATAATTCCTAATAACCAATATAGTACAgtactatttatatataaagtataggtTGTTTGCTGGAGTATTTTGATCAATTGCTGATTGATCGATTTTATGTATAGGCAAAGTATTAAAGGGAATGCTTTTTTCTGCACTGTCCCATTtgtcatatattaaatatgcatatatgtattatggctatatattttgttttagccTGCTTTTAGCTATCCCAATGTGTATGCAATTAGACACAAAAATATAACTACACAATTTCAAAcactaaaaaatatacaatcctctcagaatttaatgtgcctttttgaaaatattatgtattatattattagaaataaaaaacattatgtaacatttttaccttaaaaaacagctttaaaaccaTTGTGATGCTCCACTGAGCAGTAAAAGGGAGAATAATGCCTATTTTGGACTTAGCATGCCAAAAACTGCACTATGTAAATAATTCATACAATGCTTATGAAAACTATGTAAAGCGGCATATCCCaggtcatatttgtgtaaaatccacATGATTGGAGTGACATGATTCTTTTACCTCAGATGTTGGCTCAGAAATCCATGTTAAAAGTGTGTCCTTAAATGTAAACTTATGTTATGgttgaacaacaaaaaaaaattgacaaagtGTGCTTcagaaaaaagatgaaaaaaagaaccatccagactgttatcagcaacaagtctAAATGTGTGCACTGTCATGTTATGGGGTTTTGTAAGTATATTTCTGTGATTGCAGCATCAATGTGGGAAGATACATTAAGATATTAGCACAACACATGCTGGCTTCAAGACAATTTTGTCTTGTcaaggcattaaaaaaaaagacaatgtaaAACCACACGCTGCATACATTACAAAGGCAGGGCTGGTGAAGAAAAGGTTATGAAAAGGTTACAGGTACTTGACTGGCTTGTCTGCAGTCCTAACCTGTGGCGAATTCGTTGAAATGGCAACCCTGTGCTGTTGAACGCCTTAagatgtatttgcagaaaaaacagcacaaaGTAATCCCTAAAACACTTCATCACTTGAAATTTGTTGCAGGCATCTTACTCTCTACagtgaaataaaagtcaaagtaaaatgtaaa
>XM_022680295.1
GTGTGGTTCGGACGGGGGGAGGCAGACAATACCAGCACTGTTTGTTCTCCTCGAGAAGGTATTGAGAAAGGGAGGGTGAGAAGAAGGAGGGATGGGCGAGAAAGGAGAAAGGCAGAGGTCGTCAGTGGACGGAGCTGGCCATTGTGAGCAGAGTGGGCATCAGCCTTGAACCATACTGTGCTTTTAGTCAGGGTTTTTCAGTTGTAGGCCAGTTTAGAGGTTAACAAGCTGTGGAGAgtgaagagagaggagaggtcAGAAGCTCAGGCCAGAACTTTCAGAATGAAATCCCGTGCTGCACTCTCCCCGTCAACAACCTCTTGGAATATTTCCATCACAAGAGGCTTCAGTATTCTAACTGAAGACTAACTGCTTCAGGGCTCTGACCACATCTTCTGGAAATAGGGGAGAGGAGCGGGGCAGACAGGAAGTGGTGTAACAATGGAGGGCTGTTCTGTTCTTCCAGTGGTCATCATGATCTCCATCATGCCCGGTTTGGTGGGGAGTGAGCTAAGAATGTCTAGACAAGAACTGAGAGGCAGTCAGCTGACCGAAGGCCTCGGCGTCCCCCGTCCCCGAGCCAAGCGTGGCTGGATCTGGAAACAGCTGTTTGTGGAGGAAGAGGATCCCATACCCAAAATAATCGGCCAGCTGAAATCAAACTACGACAAAGGAGACTTTACGATCAGGTACATCCTGTCTGGAGAAGGAGCAGGAGATGTGTTCCGCATCGACGAGTTCAGCGGTGAGATCCATGCTCTAAAGAGTCTGGACAGAGAAGAAAAAGCCTTCTATGTGCTCCAAGCCCACGCTATTGACCGCAGGAACGGCCAGCCAGTGGAGCCTGAGTCCGAGTTCATCATCAAAGTCCAGGATATCAATGATAATGCCCCGGAGTTCATAAACGAGCCCTACGTGTCCAGTATTCCAGAAATGAGTCCGATAGGGACCACAGTTGTCCAGGTGACAGCCACAGATGCAGATGACCCCATGTTTGGGAACAATGCCAAACTCATCTATTCCATCCTGCAAGGAGAGCCCTACTTCTCAGTGGAGCCCAAAACAGGTATAATAGTGACCTCCTGGCAGAACATGGACAGAGAAGCCAGTGAGACGTATCTGGTGGTGGTTCAAGTGAAAGACATGTTTGGATTTTCTGGAGGCTACAGCGCTACGACAACTGTGACCATCACCCTCACCGATGTCAATGATAATGGACCAACCTTCCAACACAACTTGTACACATTTGCATTAGAGGAGTCAGCACCAGTGGGCACCACGGTGGGCAGGGTCATGGCAGAAGATGCTGACATTGGAGTGAACGCCAAGATGAACTACAGTCTGGACGACCTGGAGGAGAGCGCCACCTTTAGAGTCCATACGGATCCTGAAACACAGGAGGGGATAGTGACCCTGGCTAAACCTTTAGACTATGAGAGCAAGCGCAGATTTGTCATTGCCATAGAGGCCATCAACGCCCACGTGGACACCAGATTCCTATCCTACAGTGAATTTAGTGACCGGACGATGATTAAAATCCTGGTGACGGATGTGGATGAACCTCCACTTTTCTCCGCTGAGGTTTATGAATGGAAGGTTCTGGAGAACGCACCTGTTGGAACGCAGGTTGGAACAGTCTCTGGCAGAGATACCGATGCTGCCAACAACCCTATCAGATATTCCATAACCAAGAGCAGTGACTTGAGAAAAGCCTTCCGGATTGACCCGAACAATGGGACAGTGTCAGTGGCCAAACCTTTGGACCAAGAGACAGCAGCCTGGCATAATCTCACTGTCACAGCCAAAGAAACCAagGAGAATCAGCTCTCATCCTCAGTGTTTGTCGCCATCAAAGTCCTGGACATCAATGACAACATCCCCACACTGTCCAGGGACTACCAGCCCTACGTGTGTGAGGGCACAGAGGCAGGAGAGCTGATCCAGATCATCAGTGCGGTGGATGCAGATGACCCATCGGAAGGCCACCACTTTTATTTCTCTATGTTACCAGATAAACACATCAACCCCAACTTCACCATCAGAGACAACCAAGATAACACTGCAGGTATTCTGACACGTCGGAGCTCGTTTACCCGTCGTGACCGGACACTCTATCAACTTCCAGTTGTCATAACGGACAGCGGCTCCCCCGCCCTCTCCAGCACGAGTACCCTCACTATCAGCGTGTGCTCCTGTCAGCCTGCAGGACACTGCCCATCAGGAGGGGTGGAAGCACTGGCACTGTCTATGGGCCTCAGTACACAGACACTACTGGGACTGTCTGTGTGCATCATCACACTCATAGAGAGCTTGTAACAGTGCAAGCTAATTCAGTTCCACTTCACATCACACAGCCCTGTCCTTATTAATGCTAGCAGTGTGGAGGCACAggaagctgcagcagc

Function

NR:

description
PREDICTED: cadherin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680293.1 True 4608 mRNA 0.46 12 10884853 10952099
XM_022680295.1 False 2405 mRNA 0.51 13 10887104 10952098

Neighbor

gene id symbol gene type direction distance location
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding downstream 544664 10329090 ~ 10340189 (-)
LOC103028097 tnip3 coding downstream 606520 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 626980 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 766245 10103179 ~ 10118608 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding downstream 806271 10071078 ~ 10078582 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 395556 11347655 ~ 11370382 (-)
LOC103046022 NA coding upstream 428903 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 449417 11401516 ~ 11566079 (-)
akap10 akap10 coding upstream 615865 11567964 ~ 11588327 (-)
LOC103044795 ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717 coding upstream 644269 11596368 ~ 11606026 (-)
G17859 NA non-coding downstream 29782 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 341246 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 541590 10342796 ~ 10343263 (-)
G17799 NA non-coding downstream 586196 10293586 ~ 10298657 (-)
G17796 NA non-coding downstream 614229 10269491 ~ 10270624 (-)
G17921 NA non-coding upstream 98157 11050256 ~ 11060895 (-)
G17929 NA non-coding upstream 194306 11146405 ~ 11147408 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 827933 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 834133 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 927653 11879752 ~ 11880042 (-)
G17792 NA other downstream 637535 10246675 ~ 10247318 (-)
mak mak other downstream 875702 9995145 ~ 10009151 (-)
G17638 NA other downstream 1322128 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 1998536 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 2877233 7924929 ~ 8007620 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 63930 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 124139 11076238 ~ 11083799 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 133381 11085480 ~ 11334518 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 483337 11435436 ~ 11595523 (-)
G18037 NA other upstream 732888 11684987 ~ 11685391 (-)

Expression


Co-expression Network