LOC103030910 (LOC108444009)


Basic Information

Item Value
gene id LOC103030910
gene name LOC108444009
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33983194 ~ 34046385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684755.1
TGAGCGGAGGACACgcgcagcagcaggagcagcagcagcagcagcagtgagtcGGTTCAGCGTTCATGGAATAATAATTGAGAAACTTCAGTCACTCCAGCAGCTGATGAGCAAGAAAGGCCACAGaacagctagagagagagagagagagagagagagagagagatcgtaAGTCAGAAAGTCCTGCAGGACCAGTGGAGTAAAGGATTGCACAGAGGAGGATaacagaacagcagcagaaaaacAGCGGGACTATCAGAACACTGCAGTGAGGAATATGGGAATATGAGGGGTTACTACTGTTCATCCTAAGGACTTCAACAACAACAGCTGATCAGAATGGGGAACACAGACAGTCAGTACAGCAGCTTCATCATCCCCAGCAAGTCCCGACCCTGCTCTCTAAAGATAAATCCCCCCAAAGAGGAAGCCCTGTCCCCCCACAGCTGGTGGAGGAgcgcaggaggaggagggggaggagaaggaggaggaggagcgtCTAACTACAAGTCCCGCGGCTCATTCAGAAACAGCTCAAACCAGCACAAAAATGGCCAGCCATACGCCTCACGCCACTGTGAATACATCaaaagcaacaacaacaacaagcaACAGCAGCACTGTTCCACACAAAACAACAGCAAGCTGGACTATGGGTGTCTCCTGGCTCAGCAGAACGGCTGCTATGTTCAGGGCAGTAGCCCCCGACCCTCAGCCAAAAGCTCTGGCTCTGAAGATCTTCACAGCAGAGGAAGTCCCAAGGTGCTATTCAGGCAGGACGGGAGTTTGAGGGTTGAGTTTACCAACAGCAGGCCAGAGCTGGATGATGTCCCTAAGGACTCTACTCTGAGAGACAGTAAAGGCAGCTCCCTCAGCTCTGAGGCGTCCTGGTACGATTCTCCATGGGGTACAGGGACAGATCTCTGTGATAACGTCTTTACCACTGGTCAGCCTTCGGACAACAGTAGCGGCTACACCACTCTGTCCTCTACACGGACTGATGACTTCAGCTCCTGCCCCACAGTCCAGCTGGACGGACACGTGACTGAACTACTCCAGCCCTATCACCAGGCCAGGATCAACAGCAGCCAGTACAGCAGCAACGGCTACGTCAGCAGTTATTCCGGACGCACTGAGGAGGACAGCGGCATCGGAGACTCTGTCCTGCTCTCTATAGAGCCTAAAGACTTTGGATTGACCTCTTTCACTGAACTCTACACTAACCCCAACCTAACCGGCCCATTTCCCACCACTGGAATACTGCCAACAAGTCATGTGCAGGACATGCCTGACCTCCAAGAAGAGGCTCTTGAAACCCAAGCTTTTACCTCCCTCACACTCCCTTGCAGAAAACCTGTCAGTGACACCAACAGCAGGAAAGACTCGCTGAAGAGCCGCATCCGCCGCCTCAGTGACTGGACGGGCAGTCTAAGCAGGAAGAAACGGAGGCTGCAGgagCCGAGCACTCTGGAAGTCTTCGAGCCGCTTAGCAATGGAGTGGACGGCCTGCTTGGTGACTCCAGCCTTCAGCTGGGTGGCGGCCCGTACTGGAATGGCCTTGTGTCCAGCCAGACGCAGTCGGCCTGCTCTCTAACTGACCCTGTGCAGCAGAGCCAGAGACAGAACGTGTATGAGAACTTTAAGCAGGAGCTGGAACCGGGTGGAGGCTGCAGCAGTGCTCTGTCGGATGCTCTTCAGGCGTGGGAAGGTGATGGGGAGCAGGGCGAGAGCAGCAGTGGTTCTCTGGGTTCTCTGGAGCAGATGGAGCTACTGTTTGAGAAGGAGCAGGGGGTGGTGCGCAGGGCCGGCTGGCTGGCCTTTAAACCGCTCATCAGCCTGCATAAGGAGCGCAAACTGGAGCTGCTGACTCGCCGAAGGTGGAGGCAGTACTGGGTCACACTTAAAGGCTGTACGCTGCTGCTGAGTGAGGCTAATGGTAAAGGATGTCCAGAGCAGGAAGCCGCCCCACGTTACGCCCTGCAGGCTGAGGACAGTATAGTACAGGCTGTCCCGGAACACCCCAAGAAAGAGCATGTCTTCTGTTTGAGCAATGCTTATGGAGACGTCTACCTGTTCCAGGCTGCTAATCAAACGGACCTCGAGAACTGGGTGACGGCTATCCACTCAGCCAGCGCCTCACACCTGGCCAAACGTCAGGGCAAAGAGGATACAGTGCGGCTGCTGAGGAACCAGAGCAAAACCCTGCTGCAGAAAATCGACATGGACAGTAAGATGAAGAAGatggctgagctgcagctgaCGGTCATTAGTGACCAGAAGAACAGGAAGGCTGTAGAGAGCCAGATCCAGCAGTGGGAGCAGAACCTGGAGAAGTTTAATATGGAGCTATTCCGCATGCGCTGTTATCTAGCCAGTCTGCAGGGCAGTGAGCCTCCCAACCCAAAGAACCTGCTGGCTGCTGCTGGACGCCCGTCAAAGACAGCGCTCAGCCGCTTGGGAATTTTCTCTGTGTCATCTTTCCACGCCCTGatGTGCACTCGTGACGAGGCCACTCTGAAAAGGCGTTCCCGTTCTCTGTGTCGTGGCGTTCGGAGCAAACGGGGAATTTTCTCCTCTCAGAAAGGCCAAGACAGCCTGACCAGACGGAACCATGAAAAGAGACAGTCTCTATCACAGATATTCGAGGGACAACCCCCTGGAACTCTGTGCCACCCAACAATACAGAGCAGCTCTGAGCAGAGACTGGACGGTTTATCCAAACTGCACTCTACAGCTCCTCCTGAAGGCCACTCCTGGGACTGTCCTGTAGAAACCCTGGTGCTGGTGTCTATGCCGGATGGCCATGTCCTCAGTGTTCCTGTTAAGCAGGATTTCCTAGTGGCTGACCTGCTCTGCATGGCCTGCAAGGCTAAGCAGCTGGAGCCGGTGCTGCACTGCTTGCGTGTGAAGAGGCGTTTGGGTCAGGATGGGGAGTCCAGCATTCCAGCTCCCACTGACCTCCTGAGAGAGCTGGTGTATGATGAACTTGAGGTTTGCCCGCTCAATGTTCTCATCCTAAACATGTCACGTCCAAACACATCCATTGATTTTGGGTTTGCTGTAACGGGGCACGTGGACGGCTCGAGGCGGAGTCACATCTACGTTAGTGAGGTGCAAACTGAAGGCTTGGCGTTCACTGAGGGACTGAGGGCTGGAGATGAGATCTTGGCTGTGAACAGTGTGAGTGTATCTACTCTGGACCTGGGCCTCATACACACCTTCTTCAGCCAGAACACCCTGCAGCTGGTCCTGCGGAGAGAGGAGTGCGTATCTGATGATCAGAGCAGTGCCTGGCCAGAGTGCGACCCTGCTGACCCCTACTGCCCTCCTCCACCACTCAGCCACAGCCATCCACAGCTGGGCTCTTTAGAAGTGTCTCAGTTGCTGGAGGTTCGAGGAGATTCGATGGTGTCTGTTTCAGAGGAGGCACAGGATAAGACTGCAGAGCGCTGCAGAAAGaTAGTAACTCCTGCATGTCCACTGTTCCAGCCTTTCCCAGAAGATCCAGGCCTCACTGTGGACGGCTACAGAAACCCTTACTCCACTGAAAGTGCTCCAGCCAGAGCCAGCCCACGCCACATGTCCGTCACAGAAAGACTGCACAAGGTCATTCAGGAGCTGGTGGACACAGAGAAGTCATATGTAAAGGATCTGGGCTGTCTGTTTGAGATCTATTTGAAGCCTTTAGAGAGACAGACGTTCCTCAGCCATGGAGAGATGGAGTCTCTGTTCGGCAGTCTCCCAGAGATGCTGGACTTTCAGAGGATATTCCTTCAGACCCTGGAAGAGAGAACCACCTCATCTCCAGACTTCAGGACACTGGAGACACCTGAGCAGCTCAAGAAGTTACTGTTCTCTTTGGGTGGATCCTTTCTGTACTATGCTGACCACTTCAAGCTGTACAGCGGCTTCTGCGCCAACCATATCAAAGTCCAGAAAGTTTTAGAACGAGCGAAGACAGACCGGGCATTCAAAGAGTTCCTGGAGGCGAGGAACCCCACCAAACAGCACTCGTCCACTCTCGAGTCCTACCTCATCAAACCTGTGCAGAGAGTGCTGAAGTACCCTCTGCTGCTGAGAGAGCTGGTGTCCCTGACTGACCCCGAGAGTGAGGAGCACAGCCACCTCACAGAGGCTTTGAGGGCAATGGAGAAGGTGGCCAGTCACATCAATGAGATGCAGAAGATCTATGAGGATTACGGCACTGTGTTTGACCAGCTGGTGGCAGAGCAGagcagtacagagagagagGTGACGGAGATCTCAATGGGAGAATTCATCATTCATAGCTCTGCACTGTGGCTGAACCCCATGCCCTCACTGGGTCGAATGAGGAAAGACCCCCAGCTCACTCTGTTCATCTTCAAGAGGGCAGTTATTTTGGTGTATCGTGAGAGCAAGCTGAAAAAGAGGATGACAAGCTCCCGCTCTGCAGATCTGGACCCTTTTAAATTCCGCTGGCTGATTCCCGCCTCATCTGTGCAGGTTCGCCCTGGAAACTCAGCAGGATCTGAGGACCCCTGTCTGTGGGAATTAATTCACACGAAGTCAGAAGTGGAGGGAAGACCAGAAACTGTTTTCCAGCTCTGCAGCAGTAATTTGGAGAACAAGGCCAACGCAGTAAAGGCCCTCCGCTCCATCCTGAGAGAAAATGCTAAAAGGAACGTTCCAGCTGAGCGTGGATCCAGAGACAACCTAACGTTTCCCCGGAGGAGCCACCCAGCAGCAGTCAGAAGCAGCTCCTGGCTCCAGAGACTCCAGCCGCAGTCAGATGCACTTAAACGCAGTCCACTAGACACAGACGAGGGCAGACTGCTCGGTATAGACACTCAGTCAGAGCCCGCCTGCGCTCCCAGAACTGACAGAACTGACACCTCTCACAGTAAGAGAGCTCGACTCTGCTCCCTCACCAGCTCACTGGAGGCCCAGCTCCAGAGACTGAGCTTCATGGACCCGCAGGAGACCAGACTCAGAACCTCCGGCAGCCTGCAGGCCAGTCAGCTCACCCTGCTGCAGGACACGTCTGCACTGGACCTCAACAACCTGCTGACTCGAGACTGCAGCGTACAGAACCTGAACTCTGTCCCTAATGAAGACTGCTTCTACGACACGGTCATGGGCATCCAGAAAGCTGTAATCCCCACACTGTAGAGTTAGCAGGGGTCTTCATTTCTGCACTTCTGGTCCTGGAGGGTCTTAGTCCAGCAGTTTTATGGTGTTCTTATGTGCTCAAAGAGTTAGATGTGATTCAAGCCAAAGTTAGTTAGGCTGCAGCCAGTGGGTTAAGTATGATGTTTTGGGTCCTCAATATAACAGAACCTCCGAAGTCATAAGTGTATAAAAGCATTGAGGGATGTATGGGCTTCAGTCCAGAACTTTTATTGGGATTGGTCACATTGGACCCAGAGTATGATGGCACCTTTAACATTGCTAATAGCTATGCCACTGGTTGTAGCCTGCAGTTATTtagttaatataataattataataataataattttaaataataatctt

Function

NR:

description
PREDICTED: T-lymphoma invasion and metastasis-inducing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684755.1 True 5514 mRNA 0.53 30 33983194 34046385

Neighbor

gene id symbol gene type direction distance location
ndufaf7 ndufaf7 coding upstream 184420 33789582 ~ 33798774 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding upstream 301358 33676075 ~ 33681836 (+)
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding upstream 333537 33625486 ~ 33649657 (+)
insm1 NA coding upstream 471577 33508074 ~ 33511617 (+)
cfap61 NA coding upstream 484873 33444402 ~ 33498321 (+)
LOC103030598 cldn20,LOC103030598,LOC107679670,LOC105017817 coding downstream 4868 34051253 ~ 34069327 (+)
LOC103034505 LOC108444017 coding downstream 50104 34096489 ~ 34193035 (+)
LOC103029743 zdhhc14,LOC108444016,LOC107747944,LOC107679689,LOC107742328,LOC107560202,LOC108258056 coding downstream 159958 34206343 ~ 34245118 (+)
LOC103028593 LOC108258153,LOC108426258,LOC108444014,LOC107751776 coding downstream 216611 34262996 ~ 34269700 (+)
LOC103028909 NA coding downstream 230716 34277101 ~ 34284584 (+)
G23427 NA non-coding upstream 95325 33885462 ~ 33887869 (+)
G23367 nkx2-4 non-coding upstream 328205 33650637 ~ 33654989 (+)
G23356 NA non-coding upstream 403672 33579267 ~ 33579522 (+)
G23349 NA non-coding upstream 414252 33568394 ~ 33568942 (+)
LOC111195982 NA non-coding upstream 480843 33501237 ~ 33502351 (+)
G23462 NA non-coding downstream 205 34046590 ~ 34047774 (+)
G23499 NA non-coding downstream 201452 34247837 ~ 34286895 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding downstream 616679 34663064 ~ 34667031 (+)
G23683 pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585 non-coding downstream 629633 34676018 ~ 34679797 (+)
LOC111196008 NA non-coding downstream 782451 34828836 ~ 34830350 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 18686 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 203291 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 387483 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 813802 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 901332 33076624 ~ 33081862 (+)
trdn NA other downstream 1180413 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 1997046 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 2203439 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 3542721 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 3881970 37928355 ~ 37933989 (+)

Expression


Co-expression Network