rpf2 (rpf2,LOC102791246,LOC106571313)


Basic Information

Item Value
gene id rpf2
gene name rpf2,LOC102791246,LOC106571313
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38867410 ~ 38877719 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685168.1
GctcagacttttattttgaaagccgAGGCCATATTTGCTTCACAGCAACAAGCAGCGTGTAAGATGGCGCATCTGGACGGAGTGGTAAAGCCGAAGACAAAGCGGTCCAAACGCTTCCTGGACCACAGAGCACCGAAGCTGTTGGAAAACTCGAAGAATGCGATGATTATGAAAGGAGGGAACACAAGTGAAACAGTAACTCAGGCCCTGAAAGACATATATTCATTAAAGAAACCAAATGTTGTGCTGTACAAAAAGAAAAACATTATGAGGCCTTTTGAGGACTCCACATCACTGGAATTCTTCTCCAAAAAAACAGACTGCtccctttttttatttggctCGCACAACAAGAAACGACCCAATAACCTCGTATTCGgtcgaatgtttgattTTCATGTGCTGGACATGTTTGAGATGGGCATCGAGAAGTTCACTGCTCTGAAAAACATCAAGAATGAAAAGTGTGCAGAGGGCACTAAACCAATGCTGATATTTGCTGGGGAGCTTTTTGATGTGGATAATGAATATTCACGTCTCCGGAATGTCCTGACAGATTTCTTCCGTGGTCCTGTTGTACCTGCGGTGCGGTTAGCTGGCCTGGAGCATATTCTCCATTTCACTGCAGCAGATGGAAAGATCTTCATGCGAAGCTACAGAGTACTTCTGAAGAAGTCGGGGTGCCGGACCCCTCGGATTGAGCTGGAGGAGATCGGCCCATCGTTTGATTTTGTTCTGAGGAGAACTCACCTGGCCTCAGATGACTTGTACAAGACTGCACACAAACAGCCTAAAGGGCTGAAGCccaagaaaaagaagaacattTCTCACGACACCTTTGGCACCAAGTTTGGCCGTCTACACATGCAGAAGCAGAATCTGGACAAACTGCAGACAAGGAAGATGAAGGGactgaggaagaggagaggagcTGTGGTTGTAGAGAACGGAGGAACAACTTCTCCgaaaaaaatcaaaactcaGGAATAGACTCTGTTCTCAGAGTGCTAATGGACTTTACTGACCTTACAGCACTGTGTGAATTGAATTGGACTGACTTGTTCGAAAGCCTCTTCACACAGAAATCACTGATAAGAGGCGGAgcaaatataattttgtatacACTCTTTCATGTCAGATGTTCTTTGTTCTATGAAGCCTTTGTGGAACTTCAGTGCAGTAAAAGAAGCTTCCAGAAACAGTTGACTGtgctaaaatttaaatattttgttaatatGTTTTGTTGAGTCACAGCGTATCTCATAATTGTGAAAATCTGATATTGGTGCTGTGCATGTCTGTGTATGGTGATatataaacatttctaaaaaca

Function

symbol description
rpf2 Predicted to enable rRNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and ribosomal large subunit assembly. Predicted to act upstream of or within maturation of LSU-rRNA. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; blood; head; midbrain; and segmental plate. Orthologous to human RPF2 (ribosome production factor 2 homolog).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K14847 RPF2; ribosome production factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685168.1 True 1333 mRNA 0.43 10 38867410 38877719

Neighbor

gene id symbol gene type direction distance location
slc16a10 slc16a10,LOC107688318 coding downstream 6245 38817207 ~ 38861165 (-)
mfsd4b NA coding downstream 51511 38807860 ~ 38815899 (-)
marcks NA coding downstream 413219 38449993 ~ 38454191 (-)
nt5dc1 nt5dc1,LOC107704358,LOC107565441,LOC102795200 coding downstream 511544 38306777 ~ 38355866 (-)
dse dse coding downstream 567838 38279703 ~ 38299572 (-)
znf292 NA coding upstream 61679 38939398 ~ 38953445 (-)
htr1e htr1e coding upstream 79320 38957039 ~ 39011092 (-)
bub1 NA coding upstream 221707 39099426 ~ 39128033 (-)
LOC103047758 LOC108415889,LOC103369403 coding upstream 253529 39131248 ~ 39144751 (-)
slc35a1 slc35a1,LOC106607707 coding upstream 296271 39173990 ~ 39192081 (-)
G24651 NA non-coding downstream 150017 38713445 ~ 38717393 (-)
G24635 NA non-coding downstream 250382 38616526 ~ 38617028 (-)
G24604 NA non-coding downstream 256671 38607985 ~ 38610739 (-)
G24624 NA non-coding downstream 275000 38590941 ~ 38592410 (-)
G24625 NA non-coding downstream 277869 38587924 ~ 38589541 (-)
G24694 NA non-coding upstream 5180 38882899 ~ 38883165 (-)
G24688 NA non-coding upstream 6369 38884088 ~ 38884609 (-)
G24697 NA non-coding upstream 8728 38886447 ~ 38886866 (-)
G24698 NA non-coding upstream 9214 38886933 ~ 38887142 (-)
G24716 NA non-coding upstream 81963 38959682 ~ 38962053 (-)
wisp3 wisp3 other downstream 240358 38611046 ~ 38627052 (-)
ndufaf4 ndufaf4 other downstream 589695 38275466 ~ 38277715 (-)
ufl1 ufl1 other downstream 603736 38246771 ~ 38263674 (-)
fam76b fam76b,fa76b,LOC106603374 other downstream 912675 37938829 ~ 37954735 (-)
G24150 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 other downstream 1863455 36983209 ~ 37003955 (-)
LOC103024598 LOC108411439 other upstream 9907 38887626 ~ 38922917 (-)
smim8 smim8 other upstream 47904 38925623 ~ 38926993 (-)
LOC103043888 LOC108432835 other upstream 395916 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other upstream 432007 39309726 ~ 39324702 (-)
G24903 NA other upstream 577517 39455236 ~ 39458189 (-)

Expression


Co-expression Network