LOC111196295


Basic Information

Item Value
gene id LOC111196295
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39815517 ~ 39816850 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685501.1
TAACATCAGCTGCAAAGTTATTTAATGGGTTAtatttaatctgattatatGTAATACACTTCTAGATGTATTTGGTGGTTGCTTTACAGGTGAAGAAAAAACTGCTCTTAACTGGATTTCAGAATGAACTCAAGCCAAGCTCAGATAGTGGATAACACCCCTCTTTGCTATGAATTCTTAAACAGATCTTGTCCAAAGCTTGTCTATCCTCTGTTTCTGAGAGTGCCACTTTACTTGTTCTTCAGCTCAGTGGTGATTTTAACAGTGTTGGGAAACCTGTTTGTTATCAtaaccatttttcattttaagcaGCTGCACATGCCAACTAATTACCTTGTTCTGTCTCTGGCTGTAACTGATCTGCTGCTGGGTGTCATTTATATGCCTCCATGTATGGTACAATCTGTGGAAACCTGCTGGTATTTGGGTCATCTATTCTGTAAAATTTATAACAATAGTGGTATCATGTTGTGTACTGCTTCCATTTTAAATCTGTCTTTCATTTCCATTGACAGATATTATGCTGTGTGTCACCCTTTACTGTATCACAATAAAATCACCTCCTTTGTCACATTTCTAATGATTTTCATCTGCTGGACTGTTTCAACTGTAGTTGGGTTTGGAATAATATTTCTGGAGATCAACCTTCTGGGCGTTGAAGAGTTTTATCATGAGCATGTTGCATGTGAAGGAGGTTGTGTGTTGTTTCAAAGCACAACTTCGAGCACTTCTTCCTCCTTGCTTTCTTTTTATATCCCAGGCATTGTGATgctcagtatatatataaagatttttCGTGTTGCTCAAAAGCAAGCAAAATCTATTCAGgactcaaaatgtaaaaatacagaatcAGTGTTgagcaaagaggagaaaaaagccACCAAAACTCTAGCTGTGATTTTAGGCGTGTTCCTGTCACTTTGGATGCCGTTTTTTATCTGCAACATCCTCAATCCTTTTACTGGCTACTTAATTCCACCAATATTTTTTGATATGCTGGCTTGGATTGGACTTATGAATTCAACTTGTAATCCTATTGTGTATGCTTTCTTTTATAAGTGGTTTAGAAAAGCATTTAGGattattttaacaggtaaaataTTTCAGCCAGGGTCTTCACGAATTAACCTCTTTTCACACTGAAATCTAAAGCAATAGTGAAATTgtatgaaatgaataaattttAAAGTGAAGTCTGCTTTGGCAAGATTTTTATAGAACCTTAAGTTTCATTTATTATGTCAATAGACAcattgtctttattttatatataagaaTACTGACATTATGCTCTGACATGTTGAACTTGTATTtaaacaactaaataaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685501.1 True 1334 mRNA 0.35 1 39815517 39816850

Neighbor

gene id symbol gene type direction distance location
LOC103034967 LOC103034967 coding downstream 16677 39796398 ~ 39798840 (-)
LOC111196293 NA coding downstream 20492 39793716 ~ 39795025 (-)
LOC103036329 NA coding downstream 38484 39774602 ~ 39777033 (-)
LOC103031261 NA coding downstream 48854 39765455 ~ 39766663 (-)
LOC103031565 NA coding downstream 58837 39755477 ~ 39756680 (-)
LOC103038524 NA coding upstream 10068 39826918 ~ 39829162 (-)
LOC111191847 NA coding upstream 18488 39835338 ~ 39836641 (-)
LOC103042338 NA coding upstream 34441 39851291 ~ 39852300 (-)
LOC111191862 NA coding upstream 37794 39854644 ~ 39855753 (-)
LOC111191864 NA coding upstream 45992 39862842 ~ 39864323 (-)
G24964 NA non-coding downstream 83038 39724455 ~ 39732479 (-)
LOC111196215 NA non-coding downstream 291243 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 316051 39499043 ~ 39499466 (-)
LOC111196213 NA non-coding downstream 335173 39472824 ~ 39480344 (-)
LOC111191798 NA non-coding downstream 606252 39207480 ~ 39209265 (-)
G24992 NA non-coding upstream 2426 39819276 ~ 39825981 (-)
G24997 NA non-coding upstream 28523 39845373 ~ 39848209 (-)
G25128 NA non-coding upstream 566751 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 908949 40725799 ~ 40726362 (-)
G25173 NA non-coding upstream 909635 40726485 ~ 40728663 (-)
G24903 NA other downstream 357328 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 468601 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 490815 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 888524 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 892600 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 358412 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1397571 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1619191 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2039245 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 2052174 41869024 ~ 41880424 (-)

Expression


Co-expression Network