LOC111196312 (LOC103039380)


Basic Information

Item Value
gene id LOC111196312
gene name LOC103039380
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39960453 ~ 39961478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685511.1
ATGAACTCAACCCACACTGAGAAGGCGGAGATCAATTCTTTTTgctatgaatatttaaatggaTCTTGTCCAAAGTTTGTCTATCCTCTGTTTTTGAAGGTGCCGCTTTATTTGTTCTTTGGTTCAGTGGTGATTTTAACAGTATTTGGTAATCTGTTTGTCATCATAACTGTTGTTCATTTTAAGCAGCTTCACATGCCAACTAACTTCCTCGTTCTGTCTCTGGCTGTAACTGATCTGTTGCTGGGAGCACTTTTTATGCCACCCTTTATGATACAGTCTGTAGAAACTTGCTGGTATTTGGGCAATATATTCTGTAAAATACACTGCAGTATTGGTACCATGTTATGTACTGCTTCCATTATAAATTTATCTTTCATTTCCATTGACAGATATTATGCTGTGTGTCATCCCCTGCTGTatcacagtaaaatcacttcCTTTGTCACATTAATCATGATTGTCATCTGCTGGACTTTCTCAGCAGCAATTgggtttattataatatatctgGAGCTGAATATTCTGGGTATTGAAGAGTTTTACTATGAGAATGTTGCATGTGAAGGAGGTTGTGTGTTGTTTCAAAGTGCAGCATCGAGCACGTCTTCCTCTGTACTGTCCTTCTACATCCCAGGAGTTATTATGCTCAGTATATACATGAAAATATTCCGTGTTGCACAAAAGCAAGCAAAATCTATCCAGGATTCAAAATGCAAGAGCAATATACAATCAGTGTTgagcaaagaagaaaaaaaagccacCAAAACTCTGGCTGTGGTTTTAGGGGTGTTCCTCTCACTTTGGACGCCATTTTTTATCTGCAATGTCATGAATCCCTTCATAGGTTATACAATCCCTCCAGTATTGATTGAAATGTTTGGTTGGATTGGATTTATGAATTCTACTTGTAATCCTATTGTTTATGCTTTCTTCTACAAGTGGTTTAGAAAAGCATTCAGGATTATTATATCAGGTCAAATATTTCAGCCAGGGTCTTCAAGAACAAacttgttttcacactga

Function

NR:

description
trace amine-associated receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685511.1 True 1026 mRNA 0.37 1 39960453 39961478

Neighbor

gene id symbol gene type direction distance location
LOC103043887 NA coding downstream 3578 39955522 ~ 39956875 (-)
LOC111196326 LOC103039380 coding downstream 17266 39942162 ~ 39943187 (-)
LOC111191888 NA coding downstream 39009 39920108 ~ 39921444 (-)
LOC103043276 NA coding downstream 45767 39913661 ~ 39914686 (-)
LOC103042953 NA coding downstream 52390 39906919 ~ 39908063 (-)
LOC111191895 NA coding upstream 4447 39965925 ~ 39970723 (-)
LOC103039380 LOC103039380,LOC108432811,LOC108261192 coding upstream 14262 39975740 ~ 39977696 (-)
themis themis coding upstream 33106 39994584 ~ 40017094 (-)
ptprk ptprk,LOC106607755,LOC106571353 coding upstream 59014 40020492 ~ 40112623 (-)
LOC111191900 eif4g3 coding upstream 346453 40307931 ~ 40309488 (-)
G24997 NA non-coding downstream 112244 39845373 ~ 39848209 (-)
G24992 NA non-coding downstream 134472 39819276 ~ 39825981 (-)
G24964 NA non-coding downstream 227974 39724455 ~ 39732479 (-)
LOC111196215 NA non-coding downstream 436179 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 460987 39499043 ~ 39499466 (-)
G25128 NA non-coding upstream 422123 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 764321 40725799 ~ 40726362 (-)
G25173 NA non-coding upstream 765007 40726485 ~ 40728663 (-)
G25258 NA non-coding upstream 1192789 41154267 ~ 41154801 (-)
G25255 NA non-coding upstream 1260641 41222119 ~ 41223487 (-)
G24903 NA other downstream 502264 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 613537 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 635751 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 1033460 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 1037536 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 213784 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1252943 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1474563 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 1894617 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 1907546 41869024 ~ 41880424 (-)

Expression


Co-expression Network