ptprk (ptprk,LOC106607755,LOC106571353)


Basic Information

Item Value
gene id ptprk
gene name ptprk,LOC106607755,LOC106571353
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 40020492 ~ 40112623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685557.1
AGCCCCCGAGGCCTATTGCTCCTCCTCAGCTGTTGGGTGTGGGTCCAACTTATCTCCTCATCCAGCTCAACGCCAACTCCATCTTCGGTGACGGCCCAATCATCCTGAAGGAGGTGGAGTATCGCATGACCTCTGGGACGTGGACCGAGACTCACGCGGTCAACTCGCCCAACTACAAGCTGTGGCATCTGGATCCGGACACAGAGTACGAAATCCGGGTGCTGCTGACCCGGCCGGGAGAGGGGGGCACCGGCCAACCCGGACCAGCTTTAATCACACGCACCAAGTGTGCAGAACCGATGCGGACCCCCAAGACCCTGAAGATCGCTGAGACTCAGGCTCGCTTCATCGCTGTGGACTGGGAGTCTCTGGGCTACAACATCACCCGCTGCCACACCTTCAACGTCACCATCTGCTACCACTACCTCACCAGCAGGAACCTGACCAAGAGCGACTGCCTGGACATGGACCCCAAAGCCCCCCGACACGTGGTGGACCACCTGCCCCCCAACACCAACATCAGCCTCAAAATGATCCTCACCAATCCAGAGGGGCGCAAGGAGAGTGAGGAGACCGTCATACAGACCGAGGAGGAcgTTCCTGGCCCTGTTCCCAGCGCCTCTCTAAAAGCAACTCCGTTTGAGGATCGAATCTTTCTGCACTGGAAAGAGCCTCTGGAGCCCAATGGGATCATTACACAGTATGAGATCAGCTACAGCAGCGTGCGTTCGTTTGACCCCTCAGTTCCGCTGTTGCGCCCCCCGGTGATGGTGTCGTTACCCTGGAACGCCTCCCACCATGTTTTCTCTCAGCTCCACCCGGGAACCACCTACCAGTTCCTCATCAGAGCTAGAACCAGCAAGGGCTTCGGACTCCCaaccaccatcaacatcaccacTAATATATCAGCTCCCACTCTGGAGGAGTATGACGGCTCTGAGGCATTTCTGAACGAAACGGCCACCACCATCACTGTCCTGCTTAAACCTGCACAGGCCAAAGGAGCACCCATCAGtgCGTATCAGATCGTGGTGGAGGAGTTGAACCCCCACCGGACCCGGCGCGAGGCCGGCAGCGTGGACTGTTACCAGGTTCCTGTGTCCTACCAAACCGCAGCCAGTGGGGGGTCACCCTATTACTTTGCTGCAGAACTTCCTCCCGGGAACCTCCCAGAACCTTCTCCATTTACTGTGGGagataataaaacataccacgGCTACTGGAACGCCCCACTGGCCCCACGAAAAAACTACAACATCTACTTTCAGGCGGTCAGCAGCGTGGAGAAGGAAACGAAAACGCAGTGTGTGAGATTGGCAACTAAAGGAGCTACAGAGGAGCCAGAGGTGATTCCTGACCCAGCGAAGCAGACTGATCGTGTGGTGAAAATTGCTGGAATCAGCGCCGGAGTGCTGGTGTTTATTCTTCTGCTGCTGGTGGCCATTCTGCTGGTCAAGAAAAGGAGGACCTACTATTCTTACTCATATTAcctGAAACTGGCAAAGAAACGTAAGGACGCCATTGGAAACACCAGGCAGGAGATGACTCACATGGTGAACGCTATGGATCGCAGTTACGCTGAGCAAAGCACTCTCCACGCCGAGGACCCCATGTCCGTCACCTTCATGGACTCCCACACCTTCAACAATCGATTGCCCAACGACCCCCTCGTGCCCACAGCGGTGCTAGTGCCCATCACTGatGAGAATCATGCAGCAGCAGCGGAGAACAGTCGGCTGCTGGACGTGCCGCGTTATCACTGCGAGGGCACGGAGTCTCCATACCAAACTGGTCAGCTTCACCCGGCCATCAGAGTGGCTGATCTGCTCCAACATATCAACCTGATGAAGACCTCCGACAGCTACGGGTTTAAGGAGGAGTACGAGAGCTTCTTTGAGGGCCAGTCGGCTTCCTGGGACGTGGCGAAGAAAGAGCAGAATCGCACCAAGAACCGCTACGGAAACATCATTGCATACGATCATTCTAGAGTAATCCTGCAGCCAATGGAAGACGACCCGTCGTCCGACTACATTAATGCCAACTACATAGACATTTGGCTGTACAGGgatGGTTACCAGCGGCCGAGTCATTACATCGCAACCCAAGGTCCGGTCCACGAGACCGTTTACGACTTCTGGAGGATGATCTGGCAGGAACAGTCTGCCTGTATCGTCATGGTAACCAACCTGGTGGAGGTGGGACGGGTGAAATGTTACAAGTACTGGCCTGATGATGCGGAGGTGTACGGAGACTTTAAAGTTACGTTTGTGGAGGTGGAGCCTTTGGCTGAGTACGTTGTGCGCACCTTTACTCTGGAGCGGAGGGGCTTTAATGAGCTGAGGGAGGTGAAGCAGTTTCATTTCACTGGCTGGCCTGATCACGGTGTACCGTATCACGCCACGGGACTACTTTCTTTCATCCGCCGAGTCAAAATGTCCAACCCACCCAGCGCAGGGCCGATAGTGGTCCACTGCAGTGCTGGAGCGGGCAGGACAGGATGTTACATCGTGATTGACATCATGCTGGACATGGCGGAGAGGGAGGGGGTGGTGGACATTTATAACTGTGTTAAAGCGCTGCGGTCCAGACGCATCAACATGGTTCAGACTGagGAGCAGTATATATTCATCCATGATGCCATTCTGGAGGCGTGTCTGTGTGGAGATACAGCCATACCAGCGTGTGAGTTCAAAGCAGCGTATTACGACATGATCCGCATCGACTCCCAGAGCAACTCCTCACACCTCAAAGACGAGTTCCAGACGCTGAACTCTGTGACCCCTCAGCCCCAGCCTGAGGACTGTAGTATAGCCCTGCTGCCCCGAAACCACGACAAAAACCGTTTCATGGACAACCTGCCCCCAGACCGCTGCCTTCCCTTCCTCATCACCATTGATGGAGAGAGCAGCAACTACATTAATGCTGCACTCATGGATAGCTATAGGCAGCCCGCAGCCTTCATTGTGACGCAGCACCCCCTGCCCAACACAGTGAAGGATTTCTGGAGGCTGGTCTACGACTACGGCTGCACCTCCATCGTCATGCTGAATGAAATCGACCTGGCTCAGGGCTGTCCTCAGTACTGGCCGGAGGAGGGCATGTTGAGATACGGGCCAGTTCAAGTGGAGCGCGTTTCCTGCTCTATGGACTGTGATGTCATCAGTCGCCTCTTCAGAATATGCAACTTGACCAGACCTCAGGAGGGCTACCTGATGGTGCGTCAGTTCCAGTACTTGGGGTGGGCGGGGCATAGAGAAGTCCCCGCCTCCAAGCGGTCGTTCCTGAAGCTGATCCTGCAGGTGGACAAATGGcaggaggagtgtgaggagggCGAGGGGCGTACGATCGTTCACTGCCTaAACGGCGGAGGCCGCAGTGGGATGTTCTCAGCCATCAGTATTGTGTGTGAAATGATAAAGAGGCAGAATGTGGTGGATGTGTTTCATGCAGTGAAAAGCCTGAGGAACAGCAAACCCAACATGGTGGACAGCCCGGAACAGTACCGGTTCTGCTATGACCTGGCGCTGGAGTACATCGAAACCTCGTAATGGAAAAGTGGTGAAGGACTTTCTTCTCGCTGTTCACCCGTCCGGACTTTTCCCGGACCCCTCGTCAGTTCATTCAAGGCATTATTGTTGTTGTAAATTGTAACAGAAGCTGTCCGAGAGGCACGCTCGTCATTTTCCCCGTGTACAGTGCTACAGGATCCAAGTGCCGACCATCATGCCACATTCTCTGTAacgtcttttttcttttgtttgtttatgtttttatttttcgttttgttttttatgcatcttgagataaatatatttttttgtttgtttgtttggttgttttgtTTCTATGCAGCCATTGTTAACACTGAGGCCAAGCTGTTGCATGATAAAAgtgttctttatttctctctctctctctctctatgtcacTGTTACTGTCAGTGAATATGATTATATCAGTATACGTATATAGAATATCCATCgttgtgtgaaaaagtaaagagaaaaaaataatgttcatCCATGAATCGGAGTGCAGCCTGTGACATTGGCTTGGTATTGTTTGTATTGTGCACTAATGGCTGggcttattacatttttttttatttgtttgtttatttgtttctgttCATGCTTAtgtcttattttttgttaactttgtttatttttttgttttgtttggtttgttttgtttctttgtagCAGAGCTATAATCATAAGCCAAAGACTCATGTAAATATGTCTATATAGATAAAGCacattgtttgtatttattgtttactTGCATCCTTTTTTGAAGGCTCAAAACAATCATTGCCATTCCAAGTTGTttacccaattttttttttctgtaaacattttattgtagatttgtttagttttttagtttcatTTCAATAGTAgtgttttagttttgtattttatttttaagtttgaaCTTTTAGCTGTGATGTTAAggtggtttattattatttttttattttgtttgtgtaaaatgattgTGAATTGTATCTTTACCGCAACTGTTTCAGCGAAGGCCCCGGAGAACAGAAGAATTAATTTTTTCCGACGTTTTCGCTCTTGTGTTGGACTCTTTGAGAGGAAGCGGAAGAGTAACGGACGAGTACAGGAGTGTTTATTCCGTCTGCACAGTATTAAACTGCAGTATGTTTAGAGGAAGACACAGCCAGCGCCTCCATGATGGACCTGAATGGCGGTTTTATACAGTGAGGGAGGAcagattattaataatgtgaTCTTAATCATGCATAATCCTTTTTGTCTGTAGTTGTTGGCTTAATGGCTGTAATGAAACcagtaaaacacttttaataaaaaagacataATGTACCGATTGTA

Function

symbol description
ptprk Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; musculature system; and nervous system. Orthologous to human PTPRK (protein tyrosine phosphatase receptor type K).

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase kappa-like isoform X3

GO: NA

KEGG:

id description
K06776 PTPRK; receptor-type tyrosine-protein phosphatase kappa

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685557.1 True 4859 mRNA 0.50 29 40020492 40112623

Neighbor

gene id symbol gene type direction distance location
themis themis coding downstream 3398 39994584 ~ 40017094 (-)
LOC103039380 LOC103039380,LOC108432811,LOC108261192 coding downstream 42796 39975740 ~ 39977696 (-)
LOC111191895 NA coding downstream 49769 39965925 ~ 39970723 (-)
LOC111196312 LOC103039380 coding downstream 59014 39960453 ~ 39961478 (-)
LOC103043887 NA coding downstream 63617 39955522 ~ 39956875 (-)
LOC111191900 eif4g3 coding upstream 195308 40307931 ~ 40309488 (-)
arfgef1 arfgef1,LOC107595140,LOC107686689 coding upstream 207306 40319929 ~ 40358619 (-)
cpa6 cpa6,LOC107695399,LOC107686690 coding upstream 316362 40428985 ~ 40482543 (-)
LOC103046753 chrm5 coding upstream 1138937 41251560 ~ 41263819 (-)
ryr3 ryr3 coding upstream 1167244 41279867 ~ 41391804 (-)
G24997 NA non-coding downstream 172283 39845373 ~ 39848209 (-)
G24992 NA non-coding downstream 194511 39819276 ~ 39825981 (-)
G24964 NA non-coding downstream 288013 39724455 ~ 39732479 (-)
LOC111196215 NA non-coding downstream 496218 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 521026 39499043 ~ 39499466 (-)
G25128 NA non-coding upstream 270978 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 613176 40725799 ~ 40726362 (-)
G25173 NA non-coding upstream 613862 40726485 ~ 40728663 (-)
G25258 NA non-coding upstream 1041644 41154267 ~ 41154801 (-)
G25255 NA non-coding upstream 1109496 41222119 ~ 41223487 (-)
G24903 NA other downstream 562303 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 673576 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 695790 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 1093499 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 1097575 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 62639 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1101798 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1323418 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 1743472 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 1756401 41869024 ~ 41880424 (-)

Expression


Co-expression Network