cspp1


Basic Information

Item Value
gene id cspp1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 40310941 ~ 40319844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685586.1
AAGTGAGCAGAGGCGGCTTGAAGAGCAGTTACTGCAGTCAGACAGAGAAGACACTCAAAGTCCGATGAAAATCAGAGAAAACCCTGCAGTGGATGTTTTTGACATGGCCAGACTACGTATGCAGGTTCCTGCAAGAAGACCCCCCTCACACACAAGACTGGTTAACAAGCAGAACCTAGAAGATTTTAACCAACTCAAATACAGAGaCAGTGAGTCTCGGGAGCAAGTGAGGCGGGCGTATCCAGAGCCACCGGGTGATGAGTCCGGTcttgagctgcagcagcaggctCTGCTCCGAGAGCAGCAGCGGCAACTCAATAACATGAGAAGAGCCAGGGTCAACGATTACTTTGACCTGTCGCCTCTGATGAAGCCTCCTAATCAGCGGAAGCAGAGCTACAGCGACGAGACAGGGAGACACTCCCTGCTACAATCCGAGAGTGCTTTTATTGATCCTAATGGTTATTCATTCCCAGCGACACATCAGCCTGACCGTAGGCCTGGCAAGGGCTCAGCAAGAGAAAGAAGACGGCAGGCAAGAAAGACCGACTTTGATGATGGTATGGAAACCCCTGGCAGAGAGAGGAACAGCCAGTCTCTCAGCTCAGCCAACAGCTTCCGCCTGGACAAAGTCCGAGAGCACAACCAGCGCAGAATGAGAAACCTGGACAACCTGAGTGCACACGGCTGGAGATCAGGAGACATATCTGCTGATGAAGGGGACGATCTTTGGCAGCAGACTCCGACTCCACCCCCTGTTAGACGCGTTTCCACAACCACCTTAGCGACAGAGCCCTGGCTCCGCCCCGGCACCACAGAGACTCTCAAGAGGTTGATGGCGGGTCGCAGACCGTCCAGTCGCGGGCCACTTAATCACGAATGGGAGGGACCGTCCACCTACCACGGTTAAACTCAGGGTCATCATGGTAAAACTGGAGTGCACTTTCATCCCTAAAACCCTTTCCCCGTCTATGTAGAAGTCATAGTTAAAGCCAAAGAGATCTGTGTTTACTTATTGGTTCATGTTCTGCCCATGAATTAATTCTTTGGTAGCAGCTGTTTCTATCTTACCTGTACAGAAGGAGAATatgtgtttactgtttttaaaatgtcactAACCACATAATTGAGCCCCTCCATACATCAATATAACAACCATATATTTACCATTTCTCCTGTTTGTAAGAAATCTGTCATTTTTGGTTTGTAAAAGACTTATATTTAAGAACTTAAGAAGACATTTAAAATAACTTACAGTAGTAAATGAAATCAGATTTCTCCCAACATGCATTGGaaggaattaaataaaataaaataaattaattgacaAATACAAATGCTAGTTTCTCCTAATcgtttattaatttatgtatttttttttaaccttcaaATAATGCTTGACAAACTCAGAAACAGCTGCTATAAAACAGGGCAACATGACTTGAAGgccagtttagttttgtttagccCTTTTCCTGTTCTCTCAATTCGTGAAATCAGTGAAAATAAAACGTGGTGCTTTTATGTAGTCTGAATTGTAATGCGGTGAGACAGTTGCACAATCTACAAAAGGTCATTCGGGTTTAAAGCCATAAAGCAGATGCGTCTACAGAAGAGCAAAGCAGCACCGGTCATCCCGCCTCTCGCCCTTCTGTCAACCAGCAGAGCCTGGGAGGAATTACTACACACACAGGTCCCATCTGCTGCACTCTGCTGAGTGCGTCCGCGTGCGTCCGTGCATGGACTGGTACTCGTAGATGGCTATTTCTGCTATTTCTAATATTACATGCCTTTGTTTGGTCAGAATGTGCAACATGTGTGCATATTGGATGTATAACAagattgtaaaaagaaaaagcttaTTTAACTTGACATTtccagaaaaaataataaattgtgttttatttttcataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685586.1 True 1914 mRNA 0.45 8 40310941 40319844

Neighbor

gene id symbol gene type direction distance location
c3h6orf58 NA coding upstream 318744 39985145 ~ 39992197 (+)
LOC103036628 NA coding upstream 613454 39694653 ~ 39697487 (+)
LOC103032515 NA coding upstream 641126 39668510 ~ 39669815 (+)
LOC103042020 LOC108432804 coding upstream 883170 39412683 ~ 39427771 (+)
LOC103043278 LOC103043278,LOC108432833 coding upstream 942648 39365807 ~ 39368293 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281 coding downstream 186572 40506416 ~ 40726249 (+)
c3h8orf34 cunh8orf34,LOC103047203,LOC106909367 coding downstream 411543 40731387 ~ 40903436 (+)
sulf1 sulf1 coding downstream 602628 40922472 ~ 41115241 (+)
slco5a1 slco5a1,LOC107741005,LOC107686683,LOC108256392,LOC107695420,LOC107584939,LOC107758302 coding downstream 802435 41122279 ~ 41216150 (+)
katnbl1 katnbl1 coding downstream 916412 41236256 ~ 41242348 (+)
G25024 themis non-coding upstream 297140 40004173 ~ 40013801 (+)
G25021 NA non-coding upstream 316456 39992701 ~ 39994485 (+)
G24978 NA non-coding upstream 462693 39845370 ~ 39848248 (+)
G24981 NA non-coding upstream 463681 39846809 ~ 39847260 (+)
G24837 NA non-coding upstream 657922 39648388 ~ 39653019 (+)
G25142 NA non-coding downstream 175172 40495016 ~ 40495230 (+)
G25240 NA non-coding downstream 801452 41121296 ~ 41121553 (+)
G25243 NA non-coding downstream 826709 41146553 ~ 41147637 (+)
G25251 NA non-coding downstream 902274 41222118 ~ 41223485 (+)
G25287 NA non-coding downstream 973620 41293464 ~ 41296688 (+)
G24972 NA other upstream 485223 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 913063 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 969970 39325083 ~ 39340971 (+)
G24719 NA other upstream 1265160 39045170 ~ 39045781 (+)
G24583 NA other upstream 1363719 38939357 ~ 38947222 (+)
G25601 NA other downstream 2071796 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 2177878 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 2939776 43259620 ~ 43262099 (+)
rps29 NA other downstream 3040625 43360469 ~ 43363444 (+)
G25879 NA other downstream 3101927 43421771 ~ 43422046 (+)

Expression


Co-expression Network