Gene
RNA
| Item | Value |
|---|---|
| gene id | sulf1 |
| gene name | sulf1 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 40922472 ~ 41115241 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| sulf1 | Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of or within with a positive effect on epithelial structure maintenance. Acts upstream of or within several processes, including neuromast deposition; regionalization; and vasculogenesis. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including cardiovascular system; central nervous system; head; hypochord; and somite. Orthologous to human SULF1 (sulfatase 1). |
| description |
|---|
| extracellular sulfatase Sulf-1 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0044444 | obsolete cytoplasmic part | cellular_component |
| GO:0012505 | endomembrane system | cellular_component |
| GO:0009986 | cell surface | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0008484 | sulfuric ester hydrolase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| K14607 | SULF; extracellular sulfatase Sulf |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_022685621.1 | False | 5648 | mRNA | 0.50 | 21 | 40922475 | 41115241 |
| XM_022685632.1 | False | 5414 | mRNA | 0.50 | 20 | 40922475 | 41115241 |
| XM_022685639.1 | True | 5701 | mRNA | 0.50 | 22 | 40922475 | 41115241 |
| XM_022685641.1 | False | 4741 | mRNA | 0.49 | 19 | 41072417 | 41115241 |
| XM_022685646.1 | False | 5573 | mRNA | 0.50 | 20 | 40922475 | 41115241 |
| XM_022685650.1 | False | 4036 | mRNA | 0.53 | 22 | 40922472 | 41113592 |
| XM_022685656.1 | False | 3499 | mRNA | 0.47 | 11 | 41094502 | 41115241 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| c3h8orf34 | cunh8orf34,LOC103047203,LOC106909367 | coding | upstream | 19036 | 40731387 ~ 40903436 (+) |
| prex2 | prex2,LOC107741010,LOC107686687,LOC107758281 | coding | upstream | 196223 | 40506416 ~ 40726249 (+) |
| cspp1 | NA | coding | upstream | 602628 | 40310941 ~ 40319844 (+) |
| c3h6orf58 | NA | coding | upstream | 930275 | 39985145 ~ 39992197 (+) |
| LOC103036628 | NA | coding | upstream | 1224985 | 39694653 ~ 39697487 (+) |
| slco5a1 | slco5a1,LOC107741005,LOC107686683,LOC108256392,LOC107695420,LOC107584939,LOC107758302 | coding | downstream | 7038 | 41122279 ~ 41216150 (+) |
| katnbl1 | katnbl1 | coding | downstream | 121015 | 41236256 ~ 41242348 (+) |
| emc7 | emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 | coding | downstream | 129296 | 41244537 ~ 41249571 (+) |
| aven | NA | coding | downstream | 139473 | 41254714 ~ 41279937 (+) |
| fmn1 | fmn1 | coding | downstream | 288755 | 41403996 ~ 41428170 (+) |
| G25142 | NA | non-coding | upstream | 427242 | 40495016 ~ 40495230 (+) |
| G25024 | themis | non-coding | upstream | 908671 | 40004173 ~ 40013801 (+) |
| G25021 | NA | non-coding | upstream | 927987 | 39992701 ~ 39994485 (+) |
| G24978 | NA | non-coding | upstream | 1074224 | 39845370 ~ 39848248 (+) |
| G25240 | NA | non-coding | downstream | 6055 | 41121296 ~ 41121553 (+) |
| G25243 | NA | non-coding | downstream | 31312 | 41146553 ~ 41147637 (+) |
| G25251 | NA | non-coding | downstream | 106877 | 41222118 ~ 41223485 (+) |
| G25287 | NA | non-coding | downstream | 178223 | 41293464 ~ 41296688 (+) |
| G25339 | NA | non-coding | downstream | 324571 | 41439812 ~ 41442539 (+) |
| G24972 | NA | other | upstream | 1096754 | 39819276 ~ 39825718 (+) |
| eif2b2 | eif2b2,LOC107697194,LOC107685362 | other | upstream | 1524594 | 39388867 ~ 39397878 (+) |
| LOC111196173 | NA | other | upstream | 1581501 | 39325083 ~ 39340971 (+) |
| G24719 | NA | other | upstream | 1876691 | 39045170 ~ 39045781 (+) |
| G24583 | NA | other | upstream | 1975250 | 38939357 ~ 38947222 (+) |
| G25601 | NA | other | downstream | 1276399 | 42391640 ~ 42392938 (+) |
| fgfr1op | NA | other | downstream | 1382481 | 42497722 ~ 42516642 (+) |
| LOC103026014 | LOC103026014,LOC108411425 | other | downstream | 2144379 | 43259620 ~ 43262099 (+) |
| rps29 | NA | other | downstream | 2245228 | 43360469 ~ 43363444 (+) |
| G25879 | NA | other | downstream | 2306530 | 43421771 ~ 43422046 (+) |
