LOC103042238 (hpcal1,LOC108411356,LOC107549126,LOC101077504,LOC108258003)


Basic Information

Item Value
gene id LOC103042238
gene name hpcal1,LOC108411356,LOC107549126,LOC101077504,LOC108258003
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43051888 ~ 43063168 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686248.1
ACGTGACTCGTCTAGGGAGGAGCTGTGTGTCATGATTATTGCTGGAAAAAAGACACCGTGGGAAAAACGTGAATGCTGAAAATATACTGTAGGGCCATTTTCAGGAAACAGtggGTAGCTTAAGAGCAGGGAACACAAGAAAAGCAGTGATTCAGCCGAGGTGTTCTGGAACAGTCCAGGAGAGTGCTCCATCATGGGCAAACAGAACAGCAAGCTGCGTCCAGAAGTCCTGAATGACCTGCGGGAAAACACAGAGTTCACGGACCATGAACTACAGGAGTGGTACCGCGGTTTCCTCAAAGATTGCCCTACCGGCCACTTAACAGTAGAGGAGTTCAAGAAAATCTATGCCAACTTCTTTCCCTATGGTGATGCCTCCAAATTCGCAGAGCATGTTTTTCGTACATTCGACACCAACGGTGATGCCACTATTGACTTCCGGGAGTTCATCATTGCGCTGAGCGTGACATCCCGTGGAGGCCTGGAGCAGAAGCTTCGCTGGGCCTTCAGTATGTACGACCTGGATGGAAACGGATACATCAGCCGGGCTGAGATGCTGGAGATAGTACAGGCAATTTACAAAATGGTCTCATCAGTGATGAAGATGCCCGAAGACGAGTCAACCCCTGAGAAACGAACTGATAAGATCTTCAGACAAATGGACACAGACAATGATGGGAGACTGTCCCTGGAGGAGTTCATCAAAGGTGCCAAGAGCGATCCTTCTATTGTCAGGCTGCTGCAGTCTGACCAGAGCTCTTCACGCCAGTTCTGAAAGTAGCCAAGCAGCAGCTCCTACAGGAAACCCTGCCCCGTACCGTCGGCCTCAGAGGAACATCAGCCTATTGCTCCCAAAGACACAGAGACTGCATTTGAATAAGAGATCTACACAGAACCCGGATCATTTAAGTAAAAGAGGACAGGAATACAATCTGTATCTGTATACAATACAATGAAATCTAGTACTCAGATGTACTATTCTGTCACATCAAGGTTCTAGTTGACCCACAATAGTTCCTTGAGGGTGTGGTGAAAGGAAGGAGTACCATTGTTCTGATCCAAGTCCCTTGATTTTCAAAAAGCTAAgctatagttttatatttcagaggcTTGGTTTTTACAATGCCTGTAGCACActatatataacaaaacatttttttttaggtaaaatgtGTTTCAATTCATTCTAAAGACTTGTCCGGAATTCATCGCAATTACAAGTAATTGGCACATTTTCCTATTATTTCCTTTCCTTTAAACTCAATATGCAAGCAAGCATGGATAAGTTGCACTTAGTAAAGTACCACTTGTGTGACAAGAGTAGCTTTGAGTCCAAAAATCTTGATGACACACAGGTGTAAATTCGATGGGGTTCTGGAATTTAAACTGCATCCATTTATGGAAGTAGTACAGGAAATCTTTCAGTGTTTAGTCTTGTATCAGACTTGTTTAAAACTAAAGGCTCTGGAcaattaatgcttttttttgccAGCTTACGTATTTTCATAGTTTTAGACATCTGCCAATACACTATGCTTTGTCAAGGTTGAATTGCCAAAACTAGCATTTGTGTTGAATGTATAAGAGTGATCGGTATCTTTCAGTGATTCTGTAATTATATTTGTGTTAGGCAAGACAAGAGGTGTAGTAATGAAGAAGAGAGTTACAGTGCTGTTTCTTTGTGTAGCTAGAATTGGAATATCCAGCCATACTGttgtaagaaaaaaaggaaagtcagcaaaaatcatcAGCATTCAGAGGACTGCAGCTTTCCCACTGAATGTTTCATATTCATTTGTATACATTGCATATTTAAGAACTCATCAATACGCCATTATTTAAATACTAGTTTGGAGCACTAACACTTCAGAAAGGTAAAATATTGGTGTTTACATCCATAATAAAATCCACTCACTTCA

Function

symbol description
hpcal1 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL1 (hippocalcin like 1).

NR:

description
PREDICTED: hippocalcin-like protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23847 HPCAL1; hippocalcin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686248.1 True 1919 mRNA 0.42 4 43051888 43063168

Neighbor

gene id symbol gene type direction distance location
c3h2orf70 NA coding downstream 153405 42895773 ~ 42898483 (-)
fndc1 fndc1,LOC107549078 coding downstream 160816 42826068 ~ 42891072 (-)
wtap wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 coding downstream 291898 42752009 ~ 42759990 (-)
acat2 acat2,LOC107732634,LOC107549121,LOC107693222,LOC107696107 coding downstream 300246 42746474 ~ 42751642 (-)
kif25 kif25,LOC107602573,LOC105010024 coding downstream 307159 42728426 ~ 42744729 (-)
slc25a29 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594 coding upstream 116259 43179427 ~ 43189359 (-)
LOC103025090 ppp2r5cb,ppp2r5c,LOC103025090,LOC108411434,LOC107704375,LOC108257814,LOC104924693,LOC103369946,LOC100694131,LOC101473650 coding upstream 232291 43295459 ~ 43326032 (-)
LOC103024139 LOC107100300,LOC107378075,LOC108257811 coding upstream 265439 43328607 ~ 43336669 (-)
LOC103024454 hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585 coding upstream 273679 43336847 ~ 43341516 (-)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107704380 coding upstream 287725 43350893 ~ 43356000 (-)
G25769 pdia6 non-coding downstream 4302 43046102 ~ 43047586 (-)
G25739 NA non-coding downstream 18446 43031678 ~ 43033442 (-)
G25718 NA non-coding downstream 135152 42916061 ~ 42916736 (-)
G25697 NA non-coding downstream 227776 42823485 ~ 42824112 (-)
G25691 NA non-coding downstream 247747 42801755 ~ 42804141 (-)
G25776 NA non-coding upstream 56646 43119814 ~ 43135286 (-)
G25774 NA non-coding upstream 61651 43124819 ~ 43131752 (-)
G25797 LOC108411385 non-coding upstream 97253 43160421 ~ 43171214 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding upstream 109805 43172973 ~ 43179219 (-)
G25874 NA non-coding upstream 297320 43360488 ~ 43363090 (-)
G25678 NA other downstream 333499 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 1171464 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 1186044 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1609394 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 1833059 41214421 ~ 41218829 (-)
G25785 NA other upstream 35654 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 432251 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 611857 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 827461 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 1706096 44769264 ~ 44799505 (-)

Expression


Co-expression Network