cdc42bpb (cdc42bpb,LOC107684799,LOC106571112,LOC107746049)


Basic Information

Item Value
gene id cdc42bpb
gene name cdc42bpb,LOC107684799,LOC106571112,LOC107746049
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44417438 ~ 44460259 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686599.1
TTAAGCCGTTCACCACCACAGTAAAGGAGATGCGGCTCCACAGGGACGACTTCGAAATGCTCAAAGTGATAGGCAGGGGAGCCTTCGGAGAGgTTGCAGTGGTGAAGATGAAGAACACAGAGAGAGTTTATGCCATGAAAATTCTAAACAAGTGGGAGATGCTGAAGAGGGCTGAGACGGCCTGCtttagagaagagagagacgtGTTGGTGAATGGAGACTGCCAGTGGATCACCACCCTGCATTATGCTTTCCAGGATGATAACTACCTGTACCTGGTGATGGACTACTATGTGGGCGGGGATCTGCTAACACTACTCAGCAAATTTGAGGACCGGCTGCCTGAGGACATGTCTAAGTTCTATGTGGCAGAGATGGTCCTTGCCATTCACTCAATCCACCAGCAGCACTACGTGCAcagGGACATAAAGCCTGATAACGTGCTGCTCGACATGAACGGCCATATCCGCCTGGCTGACTTTGGGTCTTGCCTGAGGATGATGCAGGACGGCACGGTCCAGTCATCAGTAGCAGTAGGAACTCCAGACTACATCTCCCCAGAAATCCTGCAAGCCATGGAGGATGGTATGGGGAAGTATGGGCCAGAGTGTGATTGGTGGTCTCTCGGCGTCTGCATGTACGAGATGCTGTATGGGGAGACACCCTTCTATGCAGAGTCTCTGGTCGAGACCTACGGCAAGATCATGAACCATGAGGAGCGCTTCCAGTTTCCGTCTCACATCACAGACGTATCAGAGGATGCCAAAGACCTGATCCAAAGGCTGATCTGCAGCAGAGAGCGCAGACTTGGCCAGAACGGCATTCAGGAGTTTAAAAAGCACGCCTTCTTTACCGGCATTGACTGGGAGAACATTCGCAGCACCGAAGCTCCTTACATTCCTGATGTTAGCTCTCCATCCGACACCTCAAACTTTGATGTAGATGACGATGTTCTGAAAAATCCAGACATCGCTCCTCCTATGTCGCACACTGGCTTCACCGGCCAGCATCTGCCCTTTGTTGGTTTCACCTACACCACAGAAAGCTGTTTCTCAGACCGAGGTCGTCTGAGGCTGGCAGCGCTTGCAGACGGTGGCTTAGGAGAGGGGCTACGGAGCAGTGAGGATGGAGGCCTGCAGCTGGAGGCTTTTGAAAGGAGGATCCGCTCTTTAGAGCAAGAAAAACAGGAGCTTAACCGCAAGCTGCAAGAATCCACCCAGGCTGCGCAGTCCCTCTATGGCTCAGGCCGTGGGACAGGCACACTGGGCCGTGATAAGGAGATTAAAAAGCTTAATGAGGAAATTGATCGCCTCAAGAAGAAACTAGCAGACTCTGATAGGCTGGAGCACCAGCTGGAAGAAGCGGTGACCCTGCGGCAAGACTATGAGAGCTCCTCCACCAAGCTGAAGGCTCTGGATAAACAGGTCAAAGCTCTGCGTCAGGAGAAGGAGGACATCCACAAGCAACTGGTGGAGTCTCTGGAGCGTCTGAAGTCTCAGACCAAGGAGCTGAAGGACGCTCACCAGCAGAGGAAGCTGGCCATGCAGGAGTTCTCAGAGCTGAACGAGCGAATGGCAGAGCTGCGTTCACAGAAGCAGCGTCTGTCGCGCCAGCTTCGCGACAAGGAGGAGGAGATGGACGTGGTCATGCAGAAGATTGATGCCATGCGCCAGGACTTTCGCAAGACCGAGAAGGCCCGCAAAGAGCTTGAAGCTCAGCTGGAAGATGCTCGGGCGGAGGCTTCAAAAGAGCGGAAGCTGCGAGAACATAGTGAAGTTTACTCAAAGCAACTGGAGGGTGAACTGGAGACACTAAAGGGCAGTGGGCGAGCTTCAGGTGCGAGTGCTGAGACCCAACAAGAGCTGACAAAGGTGAAGTCCGAGCTGGATAAGAAAGTGTTGTTCTATGAGGAGGAGCTGGTGAGGCGTGAGGCCTGCCACAGCACCGAGCTGAAAAACCTGCGCAAAGAATTGCACGATTCTGAGAGTCAGCAGCTGTCTCTGCACAAGGAGCTGCTTGTGCTCAAGGACAAGCTGGAGAAGGCCAAGAGGGAAAGGCAAACGGAGATGGATGAGGCAGTGGGTACTTTGAAGGATAAATATGAGCGTGAGCGTAACCTGCTGACCGAGGAGAACCGCAAACTAACCTCCGAAACTGACAGGCTTTGCACATTTGTGGACAAACTAACAGCCCAGAACAGACAGCTGGAGGATGAGCTACAGGACCTGGCGTCTAAGAAAGAGAGCGTTGCACACTGGGAGGCACAGATTGCTGAGATTATTCAGTGGGTGAGTGATGAGAAGGATGCCCGTGGCTACCTGCAGGCTTTGGCCTCTAAGATGACTGAGGAGTTGGAGTCACTGCGCAGTTCCAGCCTTGGATCCAGACACCTGGATCCCTTGTGGAAGGTGCGTCGCAGTCAGAAGTTGGACATGTCTGCTCGTTTGGAGTTGCAGTCAGCTTTGGATGCTGAGATCAGAGCCAAACAGCTGGTCCAGGAGGAGCTGCGCAAGGTCAAGGCTGCCAACATCTCCTTTGAGAGcAAACTGAAAGATGCAGATTCGAGGAACAGGGACCTGGAGGAACAGTTAGAAGGAATGAAGAAAGATCTGGAAGAGAGTCGCTCACGCACTGACAGAGGTCTGAAACTTCCAGACTTTCAGGACTCCATCTTTGAGTACTTCAACACCTCTCCCTTGGCTCATGACCTGACATTCAGAACTAGCTCAGTCAGTGAGGTGGATGCCACGCCTCAGAAATCCGACGTTCCCTCTTCCTCCCCTTCAGTGGCCTCAGAGCAGGATGAACCAGCGAAGCCACCAGCAACCACTCCAGTTGCCCCCTCTCCAGTCTACCAGTCTTCTCTGCTCACAGAGCCAAAGCCTAAAGCTCACCAGTTGAGCATTAAGACATTCTCCAGTCCAACTCAGTGCACACACTGCACTTCTCTGATGGTGGGCTTGATCAGACAGGGCTACGCCTGCGAGGTGTGTTCCTTCATCTGCCACGTGTCCTGTAAGGACAACGCTCCTCAAGTATGCCCTATTCCACCAGAGCAGGCCAAGAGGCCTCTTGGCATTGATGTACAGAGGGGTATTGGCACAGCCTATAAAGGCTTTGTTAGGATTCCAAAGCCTACTGGGGTGAAGAAAGGCTGGCAAAGAGCATATGCTGTGGTTTGCGATTGCAAGCTCTTCCTGTACGAGGTTCCTGAAGGGAAGTCCACTCAGCCGGTCGTGGTGGCCAGCCAAGTCCTCGACCTCAGAGATGAGGAGTTCTCTGTAAGCTCTGTGTTGGCATCTGACGTCATTCATGCGACACGCAAAGATGTTCCCTGCATATTCCGGGTAACGTCGTCCACACTGAGCTCCCCAGTTCGAGCAGTGTCTCTGCTAGTTCTGGCCGAGAGTGAGGCTGAGAAGAGGAAGTGGGTGGGCATCCTGGAGGGCCTGCAGAGCATCCTGGCCAAGAACCGCCTGAAGAACCGAGTCGTGCACGTCCTACACGAAGCTTACGACAACAGCCTGCCTGCCATCAAAACCACACTGTCTGCAGCCATTGTTGATCGAGAGCGAATTGCATTGGGCACAGAAGAGGGCCTGTTTGTGGTTGAGATCACCAGAGATATAATTGTCCGTGCCGCTGACTGCAAGAAAGTTCACCAAATTGATCTGATCCCCAAAGAGAAGATGGTGGTTCTCCTGTGTGGTCGTAACCGCCATGTGCACCTCCACCCCTGGGGGGCGCTGGAGGGAGCTGAAGCTGCTTTTGATGTAAAACTGACCGAGACTAAAGGCTGCCAGGCTCTCACTACAGGCGTGCTGCGACCCGGGGGACCTGCCTGTTTGCTCGCAGCCATCAAGCGGCAAGTGCTGTGCTACGAGATCACTCGGGCTAAGCCACACCACCGCAAAATGTGGGAGGTTCAGGCCCCAGGTGTGGTTCAGTGGCTGGGGATGGTGCGTGAGCGCTTGTGTGTGGGTTACCCGTCAGGTTTTGCCCTGCTTGCCCTGCAGGGTGAGTCTTCACCCGTGAGCCTGGTGAGTCCTGGGGACCCGTCGCTGGCCTTCCTCGCACAGCAGCCCCTGGATGCACTGCACGCCATGGAAGTTGGAGCTAACGAGCTGCTCCTGTGCTTCAGTCAGCTGGGCATCTATGTAGATGCGCAGGGACGACGCTCCCGCACACAGGAGCTTATGTGGCCTGCTACTCCACTCGCCTGCaGCTCAAACTCCACTTACCTAACTGTGTACAGTGACTATGGAGTTGATGTCTTTGATGTCCATACCACAGAATGGGTCCAAACCATTTCATTAAGAAAGatcAGACCTTTGAATGTGGAGGGCAGTCTGAACCTACTGGGCACAGAGCAGCCCCGCCTCATCTACTTCAGCAACAACTCTGCAGAAGGTTATGATCTGGCCATCCCTGAGACATCAGACAATAGTAAGAAACTCATGGTGAGAACACGCAGCAAAAGGAAATTCCTCTTCAAGGTGCCTGAGGAGGAGCGAATACAGCAGAGGCGGGAGATGCTGAGGGACCCAGAAATGAGGTCGAAGCTGATCTCTAATCCCACTAACTTCAACCATGTGGCCCACATGGGTCCAGGAGATGGGATGCAAGTCCTCATGGACCTGCCACTGCAGCCGAGCGAGACTCCTTCCCCCTCATCCTCTCGCCACCACGCCCTGATCTCTCCTCCAACCAACTTTGAGCACGTCTATCACATGAGTTCCGTCTCTGCCGGGCTTTACCTGCAGAAAGAGCCCTCCTCGCAGCAGAGCCTTCCAcagctctcctcctcttcctcctcaccTTCCACCTCCTCCCTCGGAAGGAGTGTGATGCCCTCTTCTCAGGATGACTCAATTAAAGACAAGCCACGTCCACTATCTAGTATATCACGACAACAGTGGAGTAAGACCCACATCACACGCACTGCCTCCGGGGGTGGTGACTTTATTGGAGCTGGGTCATCTCGCAACATCTCAGATCCAGATCAGGACTTCgagagagagCCTGACTCAGACTCCACCAAACACTCCACCCCTTCCAACAGCTCTAACCCCAGCAGTCCCCCCCAGCCCCAACTCTCCGCATCGCAGCCAGCTCACCCTGGATGGTCTGGAGCATACTCTGGATGGCTGAGAACGAACATCACCCTGCTTCGGCGCACACCTTCACTTTTAATACACATTGCCCCCGCCCCCAGCTCTCCGCTCCGCTAGAATTTGCTACAAAGTGCCAACATTCGAACTCTCATCTCTCAGTTCGTATCTCCACACACCTGCGCCACCTTTGCAGCCAAAACTCTCTGCTCTCCAGGCTGCTTGCCAAGAGAATTATAAAACATACCCTGGATGGAACTGGGATACTGAACCGCTGTCGGAAAAACTTCTGTGATGTGTTCCTAGTGGAGTGTGATGTCTGGCTCATGCCGGCCAGTATGAGAATCAAAGCTCCAGCCAAGTATGGCCTCTGGATGCATATAATGACTGCCCCCTGCTGGAGCCTAGGTGGTAGTGTAGCTAACAGGGTCTAATAATCATcagtatgttttttctttttcttttttaatctcaATGCCATACTCTTGTgagggttgttttttttaactcattaGAAATCATGCAAATAAAAATGCCAGAAAATGCTGTTAAAATGACAAGTGAGGGGAAAACTGGCTTTCCTCTTTTAAGTGTGTAATAATTTGGTGGTTGTGTTCATCACTCATCATGTGGGATAGGAGGACCTGGAGACACCCTTCCCTCAGATAATACAGCTGGACCAGTAATGAAAACCCGTTTTGCTATTCTGTATTAGCGACACTTCTCTACGTAGTTGTGTCAGAGCAGTCACAAAGAGGCATTGACACTTATCCGACTGGGGATTTTAAGCCAAACCGGTGGGCACTTTTATTGTAATGTaaatctttttgttttgtttgtttttttccttcccCAGTCTGCATTTTTTTCAGGCATCCTTTGTAATATTCATGTTTTAACTTAGACGTTTGAGACAAACAAATACTTAGCTGATGGAACACTGCTCATTTCCATAAAGAAGTAAAGAAACTGAAGTAAAGAGAAATAAGACTTTACGTATAGTAAGTGTTTTAACAAGAGTAATGGCACACTGCTAAAGGACCACACTATTCATAGGATTTCAATAGTTCTTCTgaaactgctgctgcttttgtgtgctaatgtaaagaaataaatatgtgATTTAAGATTCTCACCATAGCCGTGTTCGATCCCTAGGTTTTACATTGTTGCATTAAAGGAGCAACTACAGGTTATCCTTCATGAGTTTCTGGAACGTAGACAGTATCATTTAATGTGGCGCTCTCACGTATGTGGTGGAATCAAAGCACCACACCACCACAACGAGAGCTGCGGGCATGACCGTCATATCCATTCTCTCACTAGCGTGCCTTCAGTGCCATTCTGTGTTACAGCAACACATTGTCCGCTAAAGCatttcagttgtttttaacaagaCAGGCTAATggtgatgttttattttgtgttcccCTCCCCTCACCCTGAAACACTGTATGAAACTTGCACATGAACATGTTTTAGTCCGAGGAAATTTCTTTTGATTTTGTCGATGGTATTCCTGTCTTTTCCCTgtgcccctcctccctccctctctcccctccactTGACTTTTCAGCTTCTTAAAAATGGGACTTTATTCTCAGAACACTACTGCTTTTACTTCACAAGAAAACAAATCACATGTTGAAATCTTTGTAATTATTGAATTGTTAGCCTCATAAATttgaacaaacaataaaaagagtatctgttgtgctttt

Function

symbol description
cdc42bpb Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actomyosin structure organization and peptidyl-threonine phosphorylation. Predicted to act upstream of or within several processes, including actin cytoskeleton organization; intracellular signal transduction; and protein phosphorylation. Predicted to be located in lamellipodium. Predicted to be active in cytoplasm and cytoskeleton. Orthologous to human CDC42BPB (CDC42 binding protein kinase beta).

NR:

description
PREDICTED: serine/threonine-protein kinase MRCK beta-like isoform X4

GO: NA

KEGG:

id description
K16307 CDC42BP; serine/threonine-protein kinase MRCK

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686599.1 True 6832 mRNA 0.51 36 44417438 44460259

Neighbor

gene id symbol gene type direction distance location
LOC103042260 NA coding upstream 58035 44357276 ~ 44359403 (+)
LOC103041645 mcm3,LOC107732373,LOC107698330 coding upstream 69782 44339246 ~ 44347656 (+)
pnoc pnoc coding upstream 119719 44281122 ~ 44297719 (+)
elp3 elp3,LOC107696156,LOC107698368,LOC107599080 coding upstream 163206 44219205 ~ 44254232 (+)
LOC103028637 LOC108439839 coding upstream 221556 44077827 ~ 44195882 (+)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516 coding downstream 426 44460685 ~ 44471931 (+)
LOC103046392 LOC103046392,LOC108414880 coding downstream 13889 44474148 ~ 44479904 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding downstream 212871 44673130 ~ 44693172 (+)
LOC111197225 LOC108410507 coding downstream 250114 44710373 ~ 44727205 (+)
wdcp wdcp,LOC107600078 coding downstream 343300 44803559 ~ 44808849 (+)
G26124 NA non-coding upstream 39911 44377325 ~ 44377527 (+)
G26121 NA non-coding upstream 49507 44364592 ~ 44367931 (+)
G26107 LOC108439850 non-coding upstream 93616 44319986 ~ 44323822 (+)
G26088 NA non-coding upstream 144934 44272294 ~ 44272504 (+)
G26043 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107698369,LOC107726431,LOC107599081 non-coding upstream 154236 44256473 ~ 44263202 (+)
G26202 NA non-coding downstream 222929 44683188 ~ 44688403 (+)
G26216 NA non-coding downstream 275575 44735834 ~ 44736653 (+)
G26217 NA non-coding downstream 276908 44737167 ~ 44738115 (+)
G26225 NA non-coding downstream 307898 44768157 ~ 44768487 (+)
G26226 NA non-coding downstream 309003 44769262 ~ 44770002 (+)
LOC103033920 LOC108416105 other upstream 923122 43490323 ~ 43494316 (+)
G25880 NA other upstream 992532 43424392 ~ 43424906 (+)
G25879 NA other upstream 995392 43421771 ~ 43422046 (+)
rps29 NA other upstream 1053994 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1155339 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 2068109 46528368 ~ 46549553 (+)
G26915 NA other downstream 3818008 48278267 ~ 48315894 (+)
G26995 NA other downstream 4095538 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 4118544 48578803 ~ 48618075 (+)
G27075 NA other downstream 4280955 48741214 ~ 48742439 (+)

Expression


Co-expression Network