LOC111197225 (LOC108410507)


Basic Information

Item Value
gene id LOC111197225
gene name LOC108410507
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44710373 ~ 44727205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686638.1
GTGAGGGAGGCAGTGTGGGGGGGGAGTGGTGGAGCTGTATCTAATCATGGGGTCCAGCGCACTCGCTCCTCAGCTCAGATGTTTCCTCACGCGGCAGCAGTGAAGATCATTTGTAGAGCCTTCGTCTGGACTCCCGCTCGCCGGTTGATCGCTGAAGGACAGGGAGAGCTCGGCTGGGTGAGGGTCGGTGGGATTAGACAGTGTTCTCCGCGCTGGAGAGCAGACATCCTCCCACATGGATATTTACTCCTCCAAACTGCCCCCCGCTGTGGATTACGGAGCCGGAGCCTTCCTGCTGCTCATAGCAATTCTGTCAGTTGTGGGGAATCTGCTGGTGCTAATAATGGCATACAAGAGGTCTTCTCACATAAAGCCTCCAGAGCTTCTGAGCGTGAACCTGGCAGTGACAGACCTCGGAGCGGCCGTCTCCATGTACCCTCTGGCTGTGGCATCTTCTTGGAATCATGCCTGGTTGGGGGGCAATGCCACCTGTATCTACTACGGCTTGATGGGATTCTTCTTTGGAACAGCCAGTGTAGCCACCCTGACAGTCATGGCTGTAGTGCGTTTCTCAGTGTCCCTGACTCTACAGTCTCCCAAGGAGAAGATCAGTAAGAGCAGGGTTCATGTGCTGCTGCTGGGCACTTGGCTGTACGCTCTGTTATGGGCTCTATTCCCTTTGCTGGGCTGGGGCAGGTATGGCCCTGAGCCATTTGGCCTGTCCTGCACGCTGGCCTGGGGCGAGATGAAGGACCACAGCCCTTCCTTTGTTATCAGCATGTTTTCCATGAATCTGGCCATCCcagccatcatcatcatcttctgcTACTTCGGTGTTGCCCTCCGGCTTTATGTCTCCTACAAGTCCATGGATAATGGAAACCTCATCCCCAATAATGTGAAGATGCAGCGCCGGCTCATGGTGATTGCCCTTCTGATCAGCATTGGTTTCCTCGGTTGCTGGACACCCTATGGGATAGTGAGCTTGTGGTCCATCTACTCATCAAGTGCCTCAATCCCTCCTTATGTCAGCATGCTGCCCTGTCTCTTCGCCAAGACCTCCACCGTATACAACCCCCTTATCTACTACATCTTCAGCAAGACTTTCAAACAACAGGTGAAGCAGCTTCTCTGTCCAACAAACAGAACTGGGACATGCTACGCCTCTCAGCCAAACAACGGCACAGAGAACGCCATCTACCTGGTGTGTGACAGGAACAAGCACAAAGAAGGGCTGTCTGCACAGCTGTCACTGGACAAGAGCAGAGAAATCGAGACACAGCTCAACTCTAGTTCATATCAGTAGTTCTGGGACTTTCTGAATGTGGTTGTGAACTTGTTGAAAGGTTTagaagttgttgtttttttaatttgcacaAAGGGAAGAACTGAACTATGATTGCAAGGAGCTACAGCAATTTGGTACTTCAAATAGCTGCAGTTAATCAATGAGACAAAgctaaatatatgaaaaataggGAGTCGCAGTTCTTTTATCTTCATTTTAGTCAGTTCCAAATAGAACAATACGTCTACAGAACTGGATCCACTAGATGGAATTACTGCAAAACCTGCAAAAGCTCAACTCCATTCTTAGCTtgcacagatttttttctcAAGGTCATCTGGGCCCAGTTTGTGTTATACGACACATGGTCATCTTTCTCACTCCGTTCATTACATAATCCTGTATATGGTGGTGATCAGCTTCAGCATGAGTGCGCTTGCATACTCTGACAGCAACCAAAAAACTATGAAATATAAACTACTGGTCAAATGTTTTAGAACACCTCTATATTTTAGTCATCCAGTAGCAGTGCTCGGTGTcccagacaagctgcttttttattgagcagctaaagctgttgccatgtgggtcagccagacctcctcctgtaccagttttctccagttgtCAAGAGTCTTTCAAAGGTgaaggaaacagtactcacagctctctggcttcatctgtaatttatctaaagaaaagacgtatacttttaatagttacagagttctctgtgtttctgtgtctttttctaatTATTATCAGTAAAGTGTGAATgtactgtgtgtaagtgtgtaaatgctgcagtagagtcTATCCCagtactgctttactacagaccaAGGCTTTGTTAATTTGAAAATTGGTAATTTTCAaagcttagtttatttatattgccactgttaactaattaattgtttgctaaaaatcacctcctcttttttacaatatacttatatatatatagtttttagttaatttcttTTCCTTAAAGGCCCTGGCAATTCATTGCAAAAGTTTGTACACTGGATTCTGTACCTGACTGGACCTGAAAatcttaaatggcaaaaaaaaaatgggggtATTCTAAATCTTCTGACTGGTAGTGTACATAAGATACAGGTCTAATAATACAGTCATATTCAAAGTCACAGTCTTTGACGATATAAAAAGTTCCTCACTTCAGCAGATCAAGAACTGAAATATGTCTACTCTATTCCTATTGTGAAGCCTGCTTGTGCTGTCTCCTCATGTGGAAGAGGCAAAATGAGTCCTTGAAACCATTTCTGTTGAATAACTTTCATTCAGCGTCAATATACATGCCTAAGCAAAGCAGACAACAAATGTAGTTTGTGTATAAAGCTGACAAAAGAACTCTTGACAAATACTTCACCTCAAATATCTCAAGtgcactgaccttctttttCCTTGCATTGTTTGTGAAATTATAAGTAcaataaaatgtcttaaaacgGAATAAAATCACATGATCTTAGGTTTCTGGAatatagaaaga

Function

NR:

description
PREDICTED: opsin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686638.1 True 2804 mRNA 0.44 4 44710373 44727205

Neighbor

gene id symbol gene type direction distance location
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding upstream 17201 44673130 ~ 44693172 (+)
LOC103046392 LOC103046392,LOC108414880 coding upstream 230469 44474148 ~ 44479904 (+)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516 coding upstream 238442 44460685 ~ 44471931 (+)
cdc42bpb cdc42bpb,LOC107684799,LOC106571112,LOC107746049 coding upstream 250114 44417438 ~ 44460259 (+)
LOC103042260 NA coding upstream 350970 44357276 ~ 44359403 (+)
wdcp wdcp,LOC107600078 coding downstream 76354 44803559 ~ 44808849 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding downstream 145259 44872464 ~ 44960236 (+)
LOC103023922 NA coding downstream 706714 45433919 ~ 45441256 (+)
LOC103022161 NA coding downstream 768476 45495681 ~ 45501646 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding downstream 833341 45560546 ~ 45570484 (+)
G26202 NA non-coding upstream 21970 44683188 ~ 44688403 (+)
G26124 NA non-coding upstream 332846 44377325 ~ 44377527 (+)
G26121 NA non-coding upstream 342442 44364592 ~ 44367931 (+)
G26107 LOC108439850 non-coding upstream 386551 44319986 ~ 44323822 (+)
G26088 NA non-coding upstream 437869 44272294 ~ 44272504 (+)
G26216 NA non-coding downstream 8629 44735834 ~ 44736653 (+)
G26217 NA non-coding downstream 9962 44737167 ~ 44738115 (+)
G26225 NA non-coding downstream 40952 44768157 ~ 44768487 (+)
G26226 NA non-coding downstream 42057 44769262 ~ 44770002 (+)
G26235 NA non-coding downstream 72779 44799984 ~ 44800646 (+)
LOC103033920 LOC108416105 other upstream 1216057 43490323 ~ 43494316 (+)
G25880 NA other upstream 1285467 43424392 ~ 43424906 (+)
G25879 NA other upstream 1288327 43421771 ~ 43422046 (+)
rps29 NA other upstream 1346929 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1448274 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 1801163 46528368 ~ 46549553 (+)
G26915 NA other downstream 3551062 48278267 ~ 48315894 (+)
G26995 NA other downstream 3828592 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3851598 48578803 ~ 48618075 (+)
G27075 NA other downstream 4014009 48741214 ~ 48742439 (+)

Expression


Co-expression Network