atad2b (atad2b,LOC107697175,LOC107667607)


Basic Information

Item Value
gene id atad2b
gene name atad2b,LOC107697175,LOC107667607
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44872464 ~ 44960236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686643.1
GGATAGTTTCACTCGCCGACAgcagagggagagagcgagagaaagagagagaaatggcgCCTCGGTGCTCTAGCTGAGACTGTCTCAGTACGAGGGAACTGACAGAGCTGAGGAGATTCCAGACGCTAGGAAAACCATGGTGAACACGAGAAAGAGCTCCCAGGACAAGCCATGCAGTCCTTTCATCTCTGGCCGGACGAGGTCTTCTCTTAGGAACAATCCAAAGATCCATAAGGATCCCAGCAGTGATGTCAGCTCCGGCAGCCCACGCTTGTCACCCCCATCTAAGAGAACACGCAGACAGACACCACCTAGCTCCAGTGACACTTCCCCCAGTCCCCAGAGCAAAGGGCAGAGAGTCACATGGAATATCAACAAACACTGCACCAGGTTGTCTACTGGAGCTTTGCAAAATGGACACAGCCGCATGACTTTGCGGGGAGATGACAGTACAGATGGGGATGATGCTCACATAAATGGCCATGCTGGGCTGAAGAGGAGCTGCCGATCTCGGAAGAGCCGGTTTGAACACCTTAACCAGAGCCTACTGTTTGACCAGCTAGTCAACAGTACTGCAGAGGCAGTTCTTCAGGAGATGGACAACATCAGCAGCATACGACAGAATCGGGAAGTGGAGCGTCTACGTATGTGGACAGACACAGAACTGGAAAATATGGACATGTACTCTCGTGTGAAGAGACGAAAAGCAATGAGAAGGAATACATTTGGAATGCAGACGCACCATAAAGTTTTGAGTAAATCCGAGGCACCtgtggaggaagaagaaggaacTGAGGAATCTcatgaggaagaagaagaggatgaTGAAGGGGAGGATGATGACGATGACGAAGGAGATGAAGCAGAGGAAGCAGGAGAGGAGAATGACAGACCTTACAACCTCAGGCAACGCAAAACTGTACAGCGATATGAGGCACCACCCATTGAGCCAGTGAACAGGAAACAAAGCAAGAACTCACTGTTTGATACACACAGGTCACCTGCAAGAAGAAGCCATATTAGAATAAAGAAGCATGCCATCCACAGTAGTGACACAACGTCGTCCTCAGATGAGGAGCGCTTTGAGAGGAGAAAAAGTAAAAGCATGACACGTGCTCGGAACAGATGTCTGCCTATGAACTTGCGAGCGGAGGACCTGGCCAGTGGAGTGCTTCGGGATCGCGCTAAAGTTGGTGCTAGTTTAGCTGACGTGGATCCCATGAATCTGGACACCTCTGTGAAATTTGACAATGTGGGAGGTCTTGCAGATCACATTAAATCTCTCAAGGAAATGGTTGTGTTCCCACTTCTTTACCCTGAAGTGTTTGAAAAGTTCAAGATCCAGCCTCCAAGGGGTTGCTTGTTCTATGGCCCTCCGGGCACAGGGAAGACTTTGGTGGCGCGGGCGCTGGCTAATGAGTGCAGTCAGGGGGACAAGAAAGTGTCCTTCTTCATGCGTAAGGGTGCTGATTGCCTCAGCAAATGGGTGGGGGAGTCAGAACGACAGCTCCGCCTTCTCTTTGACCAGGCATACCTCATGAGACCTTCTATCATCTTTTTTGATGAGATTGATGGCCTTGCACCTGTTCGTTCTAGCAGACAGGATCAGATCCACAGctCCATAGTTTCCACGTTGCTGGCTTTAATGGATGGTTTGGACAGTCGGGGGGAGATAGTGGTCATTGGTGCTACAAACAGACTTGACTCTATCGACCCTGCACTCAGGAGGCCTGGCCGCTTTGACCGGGAATTTCTGTTCAACCTGCCAGACAAAAAGGCCCGAAAGCACATTCTAAAAATCCACACCAGGGATTGGAGTCCAGGTCTAGCTGAGTCCTTTGTGGACGAGTTGGCAGAAAGATGTGTCGGCTACTGCGGTGCCGATATCAAAGCACTTTGTACAGAGGCTGCGCTGGCAGCATTGCGGCGGCGCTATCCTCAGATCTACGGCAGCAGCCAGCGCTACAAACTGGATGTGGGTTCCATCGAACTCGGGCCACAGGACTTTGGCCGCGCCCTGCGTTCCATCGTACCTGCGGCTCAGAGAGCCCTGGCCCCGCCGGGACGAGCGCTGTCCTGCGCGCTGCAGCCCCTCCTGGAGCGATCCCTGGCCCACGCACTCGACTGCCTGCTTCGAGTCTTCCCCCACGCACAGCTCCAACACAAGGAACATGTACACGACACTGACAATCAGCTGCTTGAGGAGGACTCTTACAGTGAGGGTGAGGACGGGGCTGGTACTCAGTCCATTTATGATGCTAATCCAGGATCCCCAAAGAAATCAGACTCCTCCACAGCATATAAACCCTTTCTACATTTTACCACgtCTGCCTACCAGCAGCCCACCTCATACCGGCCGCGGCTGCTTCTGACAGGGCCTCAGGGTTCAGGCCAGAGCACGCACCTGGCTCCTGCCCTGCTGCATCACCTTGACAAGTTCACTGTGCACCGGCTCGACCTGCCCACCCTCTACTCAGTCAGTGCCAAGACCCCGGAGGAGTCCTGCGCTCAGGTGTTTCGGGAGGCGCAGCGGAGCATGCCCAGTGTTGTCTACATGCCCCACATTAGTGACTGGTGGGAGGCCATCAGTGACACAGTGAAGAGCACCTTCCTCACGCTTTTACAGGACGTTCCCTCCTTTACTCCACTCCTCATCCTCGCCACAGCAGAGAGCAAATACCAGCAGCTACCAGAGGAGgtgaaaTGTATCTTCAGTCGCTCATATGGAGAGGTGGTGTGTCTACAAACACCAGGGGAGGAGGACCGCAGAAAGTTTTTCACTGACCTCATACTGGTGCAGGCAGCCAGGCCGCCACCCCGCCGGAGGAAAAAAGTGTGTGATTATGAGGTGCTGCCCCTGGCGGAGGACCCCGGTCCTCGGCAGTTGTCTCCAGTGGAGCAGAGGCGACTTGAGGAGCAGGAGGAAAATACCCTGCGTGAGCTCCGACTCTTTCTCAGGGACGTCACCAAGCGGCTGGCCACGGACAAGCGCTTCCAGATTTTCAGCAAGCCTGTGGATATTGAGGAGGTATCAGATTATCTTGAGGTGATCAGAGAGCCCATGGACTTGTCCACTATCATGACGAAGATTGACACTTACAAATACATAACTGCCAAGGATTTTCTGAAGGACCTTGACCTCATCTGCAGTAATGCACTGGAGTACAATCCAGACAAGGATCCGGGAGataaAATTATTCGGCACAGAGCGTGCAGCCTGAAGGACACGGCCCATGCGATGATTGCTTCCGAGCTGGACCCAGAGTTTGACCGCACGTGTAAAGAGATCGAAGAGTCCCGCAGGAAAAGAGAACTGGAGACCCCGCTTCAGCAAGCACCCTGCTCCAGCTGCCACGGCAGGCAAGAGGCCTGCAGGAGACGAGACCACCGGGAGCACCTCTCAGGGCGATGGAGTGGACAAGCACTGCAGCAATAGCAGCGTAAAGCGTAAGACTCGCCGCCGACCAGTCTGGGAGCGGGGAATCATTAGGAAGAAGAAGATCAGCAAGAAGGAGGAGGCAGAAGAAGATGAGGAGCCTGAGGACGAAGAGGGAGCCGACGACTCGGCTTGTGCCGACCAGGGTGACACCAGTCTGGTTCAGGACGAGTCCTCCAGTGACACCATGGAGCCCCAAGCCGATAAACCCGTTCCCCAGCCCAACGGATACACCCTGTCCACTGAGGAGGAGAGCTCTAATGAACCCACTGTAACTCCAGATTCTGGAGACGTGGTGGATAAGGTGAAGACATCTACCTCTACAGAACCTCCTCctgaagaggagaaagaggCATCTGTGGTCTCTGCCCCTCAGGAGTGTGTGAACGGAGACGAGTCCATGGACAGTATAGACAGCGAGGCCAATGAGAAAGAAGCAGAGAAAGACGGGAAGGAGGAGGAAGCTCCTTCTAAAGCAGGTCCAGAGGATGGAGCTGTTGAGGCTGTCGAGGAAAGCAAGGCAAAGGAGTGTATGCAAGCAGaagcagcatcatcatcatcagcagcagcagcagaaggaaCATCTAGTGATGGAGATC
>XM_022686646.1
TGGATAGTTTCACTCGCCGACAgcagagggagagagcgagagaaagagagagaaatggcgCCTCGGTGCTCTAGCTGAGACTGTCTCAGTACGAGGGAACTGACAGAGCTGAGGAGATTCCAGACGCTAGGAAAACCATGGTGAACACGAGAAAGAGCTCCCAGGACAAGCCATGCAGTCCTTTCATCTCTGGCCGGACGAGGTCTTCTCTTAGGAACAATCCAAAGATCCATGATCCCAGCAGTGATGTCAGCTCCGGCAGCCCACGCTTGTCACCCCCATCTAAGAGAACACGCAGACAGACACCACCTAGCTCCAGTGACACTTCCCCCAGTCCCCAGAGCAAAGGGCAGAGAGTCACATGGAATATCAACAAACACTGCACCAGGTTGTCTACTGGAGCTTTGCAAAATGGACACAGCCGCATGACTTTGCGGGGAGATGACAGTACAGATGGGGATGATGCTCACATAAATGGCCATGCTGGGCTGAAGAGGAGCTGCCGATCTCGGAAGAGCCGGTTTGAACACCTTAACCAGAGCCTACTGTTTGACCAGCTAGTCAACAGTACTGCAGAGGCAGTTCTTCAGGAGATGGACAACATCAGCAGCATACGACAGAATCGGGAAGTGGAGCGTCTACGTATGTGGACAGACACAGAACTGGAAAATATGGACATGTACTCTCGTGTGAAGAGACGAAAAGCAATGAGAAGGAATACATTTGGAATGCAGACGCACCATAAAGTTTTGAGTAAATCCGAGGCACCtgtggaggaagaagaaggaacTGAGGAATCTcatgaggaagaagaagaggatgaTGAAGGGGAGGATGATGACGATGACGAAGGAGATGAAGCAGAGGAAGCAGGAGAGGAGAATGACAGACCTTACAACCTCAGGCAACGCAAAACTGTACAGCGATATGAGGCACCACCCATTGAGCCAGTGAACAGGAAACAAAGCAAGAACTCACTGTTTGATACACACAGGTCACCTGCAAGAAGAAGCCATATTAGAATAAAGAAGCATGCCATCCACAGTAGTGACACAACGTCGTCCTCAGATGAGGAGCGCTTTGAGAGGAGAAAAAGTAAAAGCATGACACGTGCTCGGAACAGATGTCTGCCTATGAACTTGCGAGCGGAGGACCTGGCCAGTGGAGTGCTTCGGGATCGCGCTAAAGTTGGTGCTAGTTTAGCTGACGTGGATCCCATGAATCTGGACACCTCTGTGAAATTTGACAATGTGGGAGGTCTTGCAGATCACATTAAATCTCTCAAGGAAATGGTTGTGTTCCCACTTCTTTACCCTGAAGTGTTTGAAAAGTTCAAGATCCAGCCTCCAAGGGGTTGCTTGTTCTATGGCCCTCCGGGCACAGGGAAGACTTTGGTGGCGCGGGCGCTGGCTAATGAGTGCAGTCAGGGGGACAAGAAAGTGTCCTTCTTCATGCGTAAGGGTGCTGATTGCCTCAGCAAATGGGTGGGGGAGTCAGAACGACAGCTCCGCCTTCTCTTTGACCAGGCATACCTCATGAGACCTTCTATCATCTTTTTTGATGAGATTGATGGCCTTGCACCTGTTCGTTCTAGCAGACAGGATCAGATCCACAGctCCATAGTTTCCACGTTGCTGGCTTTAATGGATGGTTTGGACAGTCGGGGGGAGATAGTGGTCATTGGTGCTACAAACAGACTTGACTCTATCGACCCTGCACTCAGGAGGCCTGGCCGCTTTGACCGGGAATTTCTGTTCAACCTGCCAGACAAAAAGGCCCGAAAGCACATTCTAAAAATCCACACCAGGGATTGGAGTCCAGGTCTAGCTGAGTCCTTTGTGGACGAGTTGGCAGAAAGATGTGTCGGCTACTGCGGTGCCGATATCAAAGCACTTTGTACAGAGGCTGCGCTGGCAGCATTGCGGCGGCGCTATCCTCAGATCTACGGCAGCAGCCAGCGCTACAAACTGGATGTGGGTTCCATCGAACTCGGGCCACAGGACTTTGGCCGCGCCCTGCGTTCCATCGTACCTGCGGCTCAGAGAGCCCTGGCCCCGCCGGGACGAGCGCTGTCCTGCGCGCTGCAGCCCCTCCTGGAGCGATCCCTGGCCCACGCACTCGACTGCCTGCTTCGAGTCTTCCCCCACGCACAGCTCCAACACAAGGAACATGTACACGACACTGACAATCAGCTGCTTGAGGAGGACTCTTACAGTGAGGGTGAGGACGGGGCTGGTACTCAGTCCATTTATGATGCTAATCCAGGATCCCCAAAGAAATCAGACTCCTCCACAGCATATAAACCCTTTCTACATTTTACCACgtCTGCCTACCAGCAGCCCACCTCATACCGGCCGCGGCTGCTTCTGACAGGGCCTCAGGGTTCAGGCCAGAGCACGCACCTGGCTCCTGCCCTGCTGCATCACCTTGACAAGTTCACTGTGCACCGGCTCGACCTGCCCACCCTCTACTCAGTCAGTGCCAAGACCCCGGAGGAGTCCTGCGCTCAGGTGTTTCGGGAGGCGCAGCGGAGCATGCCCAGTGTTGTCTACATGCCCCACATTAGTGACTGGTGGGAGGCCATCAGTGACACAGTGAAGAGCACCTTCCTCACGCTTTTACAGGACGTTCCCTCCTTTACTCCACTCCTCATCCTCGCCACAGCAGAGAGCAAATACCAGCAGCTACCAGAGGAGgtgaaaTGTATCTTCAGTCGCTCATATGGAGAGGTGGTGTGTCTACAAACACCAGGGGAGGAGGACCGCAGAAAGTTTTTCACTGACCTCATACTGGTGCAGGCAGCCAGGCCGCCACCCCGCCGGAGGAAAAAAGTGTGTGATTATGAGGTGCTGCCCCTGGCGGAGGACCCCGGTCCTCGGCAGTTGTCTCCAGTGGAGCAGAGGCGACTTGAGGAGCAGGAGGAAAATACCCTGCGTGAGCTCCGACTCTTTCTCAGGGACGTCACCAAGCGGCTGGCCACGGACAAGCGCTTCCAGATTTTCAGCAAGCCTGTGGATATTGAGGAGGTATCAGATTATCTTGAGGTGATCAGAGAGCCCATGGACTTGTCCACTATCATGACGAAGATTGACACTTACAAATACATAACTGCCAAGGATTTTCTGAAGGACCTTGACCTCATCTGCAGTAATGCACTGGAGTACAATCCAGACAAGGATCCGGGAGataaAATTATTCGGCACAGAGCGTGCAGCCTGAAGGACACGGCCCATGCGATGATTGCTTCCGAGCTGGACCCAGAGTTTGACCGCACGTGTAAAGAGATCGAAGAGTCCCGCAGGAAAAGAGAACTGGAGACCCCGCTTCAGCAAGCACCCTGCTCCAGCTGCCACGGCAGGCAAGAGGCCTGCAGGAGACGAGACCACCGGGAGCACCTCTCAGGGCGATGGAGTGGACAAGCACTGCAGCAATAGCAGCGTAAAGCGTAAGACTCGCCGCCGACCAGTCTGGGAGCGGGGAATCATTAGGAAGAAGAAGATCAGCAAGAAGGAGGAGGCAGAAGAAGATGAGGAGCCTGAGGACGAAGAGGGAGCCGACGACTCGGCTTGTGCCGACCAGGGTGACACCAGTCTGGTTCAGGACGAGTCCTCCAGTGACACCATGGAGCCCCAAGCCGATAAACCCGTTCCCCAGCCCAACGGATACACCCTGTCCACTGAGGAGGAGAGCTCTAATGAACCCACTGTAACTCCAGATTCTGGAGACGTGGTGGATAAGGTGAAGACATCTACCTCTACAGAACCTCCTCctgaagaggagaaagaggCATCTGTGGTCTCTGCCCCTCAGGAGTGTGTGAACGGAGACGAGTCCATGGACAGTATAGACAGCGAGGCCAATGAGAAAGAAGCAGAGAAAGACGGGAAGGAGGAGGAAGCTCCTTCTAAAGCAGGTCCAGAGGATGGAGCTGTTGAGGCTGTCGAGGAAAGCAAGGCAAAGGAGTGTATGCAAGCAGaagcagcatcatcatcatcagcagcagcagcagaaggaaCATCTAGTGATGGAGATC

Function

symbol description
atad2b Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in negative regulation of chromatin silencing and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ATAD2B (ATPase family AAA domain containing 2B).

NR:

description
PREDICTED: ATPase family AAA domain-containing protein 2B, partial

GO: NA

KEGG:

id description
K22531 ATAD2; ATPase family AAA domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686643.1 True 4035 mRNA 0.54 25 44872465 44960236
XM_022686646.1 False 4033 mRNA 0.54 25 44872464 44960236

Neighbor

gene id symbol gene type direction distance location
wdcp wdcp,LOC107600078 coding upstream 63615 44803559 ~ 44808849 (+)
LOC111197225 LOC108410507 coding upstream 145259 44710373 ~ 44727205 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding upstream 179292 44673130 ~ 44693172 (+)
LOC103046392 LOC103046392,LOC108414880 coding upstream 392560 44474148 ~ 44479904 (+)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516 coding upstream 400533 44460685 ~ 44471931 (+)
LOC103023922 NA coding downstream 473683 45433919 ~ 45441256 (+)
LOC103022161 NA coding downstream 535445 45495681 ~ 45501646 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding downstream 600310 45560546 ~ 45570484 (+)
LOC103021983 plcb1,LOC108258091 coding downstream 655326 45615562 ~ 45785454 (+)
plcb4 plcb4,LOC108258041 coding downstream 842518 45802754 ~ 45926101 (+)
G26286 NA non-coding upstream 6780 44865143 ~ 44865684 (+)
G26280 NA non-coding upstream 17954 44853881 ~ 44854510 (+)
G26235 NA non-coding upstream 71818 44799984 ~ 44800646 (+)
G26226 NA non-coding upstream 102462 44769262 ~ 44770002 (+)
G26225 NA non-coding upstream 103977 44768157 ~ 44768487 (+)
G26322 NA non-coding downstream 150949 45111185 ~ 45112968 (+)
G26390 NA non-coding downstream 489773 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding downstream 564252 45524488 ~ 45528585 (+)
G26476 NA non-coding downstream 1106652 46066888 ~ 46067187 (+)
G26477 NA non-coding downstream 1120069 46080305 ~ 46083403 (+)
LOC103033920 LOC108416105 other upstream 1378148 43490323 ~ 43494316 (+)
G25880 NA other upstream 1447558 43424392 ~ 43424906 (+)
G25879 NA other upstream 1450418 43421771 ~ 43422046 (+)
rps29 NA other upstream 1509020 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1610365 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 1568132 46528368 ~ 46549553 (+)
G26915 NA other downstream 3318031 48278267 ~ 48315894 (+)
G26995 NA other downstream 3595561 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3618567 48578803 ~ 48618075 (+)
G27075 NA other downstream 3780978 48741214 ~ 48742439 (+)

Expression


Co-expression Network