gpcpd1 (gpcpd1,LOC107697181)


Basic Information

Item Value
gene id gpcpd1
gene name gpcpd1,LOC107697181
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45451286 ~ 45465612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686715.1
TCGTTATTATTTCAGATGAAAACATGGATATGTCAGCAGCACTCAGCTAGCGCTCGACACCAGCCGACCCTTTGCAGTCCGGCGATGAGGCCTTCAGTCTGACCCGAGGGGTAACACTATACATGGAAGAATCAGAAGCAGGACAAAAAACAAGCTGTTGTGCCTCACTAACAGCCATGGAATGCACTCAGGTCACATTTATTGTAAGAGGAGCTACATCACCTGgCGAGGTGATTGCAGTAGTTGGCAGCTGTGAGACGCTGGGCAGCTGGTGTTATCAGAATGCAGTGCCCTTGCAGGCAACAGCAGAAGATGGCACTCTATGGAAAAAGACAGTCGCACTTCCAAAGGGTGTCGAACACAAATATCGCTATTTTACGGGGTTCTTTCTGGAATCTAAGAATGCAGGTGGCCCAGGTCAAGTGATAGTCAATAAATGGGAGACCCATCAGCTGCCTCGATCAGTGAGCCCAACAGAGTCAGACCAAACTATTGACGATGGGCAGTTTGGAGTCAGTGGTGGTATTGAATGTACAGATTCCGGCTGGTTGACATCTCAGACTGAAATTCGCCTCCGGCTCCATTACTCTATTAAGCCTCCAGTGTCCATTACTAAAATGAAATTTAAGAAATCTCGGTTCAGGCTGAAGTTGACATTGGAGGGTGTTGAGGAGGAAGAAGATGAGGAGAGCCCTTCATCCTGGCACAAGATGACCACCACACTTGAGATCAGTATGATCAGTGATAGTGGCTATAAGTCCCGACATTCCCAGCCAGAGTGTGGCTATTCCCTGGAACCAACAAAGTGGACTGAGTACAGCATTCACACCATGGACCCTGATAACCTGGAGCTCATCTTTGACCTCTTTGAGGAGGACTTGAGTGAGAAGGTTGTTCAGAGTGATGTTCACCCTGGCCTTGTTGGCACTGCCTGCCTCTTATCTTCGTCTTTCGTGGAAAGTGGCAAGGACAATGGAGTTGTTACCCTCCCCATCATGAGCAGAAATTCCAGGCAGACCATTGGCAAAGTTAGAGTGGATTATCTAGTTATCCGGCCCATTCAGGGCTTTCAATGTGACATGCACCAGTCCTTCAGCAAGTACTGGCGGAAAAGGAGTGCACTGGATGTGGGACACAGAGGAGCAGGGAGCTCACATGCTGCCAAACATCACAAAATCAGGGAAAACACAATTGCCTCATTTCTAAGTGCCGCAAACCACGGAGCCGCATATGTGGAGTTTGATGTTCATCTGTCCAAGGACTTTGTTCCAGTCGTTTATCATGATCTCACATGCTGTATTTCCACCAAGAAGAAAAATGACAAGAATTCCATGGTGCTGTTTGAAGTTCCTGTCAAAGATTTGACCTTTGACCAGCTTCAGCTTCTTAAGCTAGCCCACACAACAGCTATGAAGGTGCATGATCACAAAGacttagtagaagaggaggaggatatAGATGAACATCAGCCCTTTCCATCACTTACTCAGATATTTCAGGCTGTTCCAGAATCTGTGGGCTTTAATATTGAGCTGAAGTGGATATCCCAGTTAAAGGATGGTTCCTGGGATGCGAACTTATCCACTTACTTCAACATGAACCAGTTTCTTGACATCATTCTCACCTGCGTGCTTCAGAATGCTGGAAAGAGAAGGATCGTCTTCTCTTGTTTCGACCCCGATGTGTGTGCAATGGTGCGAAGGAAACAGAACAAGTACCCCATCTTGTTCCTGACTCAGGGCGTATCAGATGTCTACCCGGAGCTGATGGACATCCGTTGTCAGACAACCCAGATAGCCATGAGCTTTGCTCAAAGCGAGGACATTCTGGGTATCAGTGCTCACACTGAGGACCTGCTGCGTAATATGGACTGCATTAAGGAGGCTCAGTCCAAAGGCCTGGTAGTCTTCTGCTGGGGGGATGACAACAATGACCATGAGAACAGGAGAAAACTCAGGGAACACGGCATTAATGGCCTCATTTATGACAGaATCTGTGATGACCAGCTCGAGCAGCCCAACATCTTCAAAGTAGAAGAGCAAGTATCTTTGAAGGAGGTAATTCCTGAGGAGACTCTGAAAAGCTGTGCCTGCTCCACGTACAGTATTCCCTGCACATCAGTACCCTGTTCGAGTAAAACTCAAGTTGGCAGCGGCGAGTCAGACTCGGGCCTCAGTTCATCCTGAGCTTGCAGCGTTCAGTCAACCTTTATACAAAATTCCATGTTTTCTACAAAGCAGTACAAATCACTCAACACA
>XM_022686721.1
CGTTATTATTTCAGATGAAAACATGGATATGTCAGCAGCACTCAGCTAGCGCTCGACACCAGCCGACCCTTTGCAGTCCGGCGATGAGGCCTTCAGTCTGACCCGAGGGGTAACACTATACATGGAAGAATCAGAAGCAGGACAAAAAACAAGCTGGTCCAGTGTGTTCTCTTTGCTTCCTCAGTTGTGCCTCACTAACAGCCATGGAATGCACTCAGGTCACATTTATTGTAAGAGGAGCTACATCACCTGgCGAGGTGATTGCAGTAGTTGGCAGCTGTGAGACGCTGGGCAGCTGGTGTTATCAGAATGCAGTGCCCTTGCAGGCAACAGCAGAAGATGGCACTCTATGGAAAAAGACAGTCGCACTTCCAAAGGGTGTCGAACACAAATATCGCTATTTTACGGGGTTCTTTCTGGAATCTAAGAATGCAGGTGGCCCAGGTCAAGTGATAGTCAATAAATGGGAGACCCATCAGCTGCCTCGATCAGTGAGCCCAACAGAGTCAGACCAAACTATTGACGATGGGCAGTTTGGAGTCAGTGGTGGTATTGAATGTACAGATTCCGGCTGGTTGACATCTCAGACTGAAATTCGCCTCCGGCTCCATTACTCTATTAAGCCTCCAGTGTCCATTACTAAAATGAAATTTAAGAAATCTCGGTTCAGGCTGAAGTTGACATTGGAGGGTGTTGAGGAGGAAGAAGATGAGGAGAGCCCTTCATCCTGGCACAAGATGACCACCACACTTGAGATCAGTATGATCAGTGATAGTGGCTATAAGTCCCGACATTCCCAGCCAGAGTGTGGCTATTCCCTGGAACCAACAAAGTGGACTGAGTACAGCATTCACACCATGGACCCTGATAACCTGGAGCTCATCTTTGACCTCTTTGAGGAGGACTTGAGTGAGAAGGTTGTTCAGAGTGATGTTCACCCTGGCCTTGTTGGCACTGCCTGCCTCTTATCTTCGTCTTTCGTGGAAAGTGGCAAGGACAATGGAGTTGTTACCCTCCCCATCATGAGCAGAAATTCCAGGCAGACCATTGGCAAAGTTAGAGTGGATTATCTAGTTATCCGGCCCATTCAGGGCTTTCAATGTGACATGCACCAGTCCTTCAGCAAGTACTGGCGGAAAAGGAGTGCACTGGATGTGGGACACAGAGGAGCAGGGAGCTCACATGCTGCCAAACATCACAAAATCAGGGAAAACACAATTGCCTCATTTCTAAGTGCCGCAAACCACGGAGCCGCATATGTGGAGTTTGATGTTCATCTGTCCAAGGACTTTGTTCCAGTCGTTTATCATGATCTCACATGCTGTATTTCCACCAAGAAGAAAAATGACAAGAATTCCATGGTGCTGTTTGAAGTTCCTGTCAAAGATTTGACCTTTGACCAGCTTCAGCTTCTTAAGCTAGCCCACACAACAGCTATGAAGGTGCATGATCACAAAGacttagtagaagaggaggaggatatAGATGAACATCAGCCCTTTCCATCACTTACTCAGATATTTCAGGCTGTTCCAGAATCTGTGGGCTTTAATATTGAGCTGAAGTGGATATCCCAGTTAAAGGATGGTTCCTGGGATGCGAACTTATCCACTTACTTCAACATGAACCAGTTTCTTGACATCATTCTCACCTGCGTGCTTCAGAATGCTGGAAAGAGAAGGATCGTCTTCTCTTGTTTCGACCCCGATGTGTGTGCAATGGTGCGAAGGAAACAGAACAAGTACCCCATCTTGTTCCTGACTCAGGGCGTATCAGATGTCTACCCGGAGCTGATGGACATCCGTTGTCAGACAACCCAGATAGCCATGAGCTTTGCTCAAAGCGAGGACATTCTGGGTATCAGTGCTCACACTGAGGACCTGCTGCGTAATATGGACTGCATTAAGGAGGCTCAGTCCAAAGGCCTGGTAGTCTTCTGCTGGGGGGATGACAACAATGACCATGAGAACAGGAGAAAACTCAGGGAACACGGCATTAATGGCCTCATTTATGACAGaATCTGTGATGACCAGCTCGAGCAGCCCAACATCTTCAAAGTAGAAGAGCAAGTATCTTTGAAGGAGGTAATTCCTGAGGAGACTCTGAAAAGCTGTGCCTGCTCCACGTACAGTATTCCCTGCACATCAGTACCCTGTTCGAGTAAAACTCAAGTTGGCAGCGGCGAGTCAGACTCGGGCCTCAGTTCATCCTGAGCTTGCAGCGTTCAGTCAACCTTTATACAAAATTCCATGTTTTCTACAAAGCAGTACAAATCACTCAACACA
>XM_022686726.1
TCGTTATTATTTCAGATGAAAACATGGATATGTCAGCAGCACTCAGCTAGCGCTCGACACCAGCCGACCCTTTGCAGTCCGGCGATGAGGCCTTCAGTCTGACCCGAGGGGTAACACTATACATGGAAGAATCAGAAGCAGGACAAAAAACAAGCTGTTGTGCCTCACTAACAGCCATGGAATGCACTCAGGTCACATTTATTGTAAGAGGAGCTACATCACCTGgCGAGGTGATTGCAGTAGTTGGCAGCTGTGAGACGCTGGGCAGCTGGTGTTATCAGAATGCAGTGCCCTTGCAGGCAACAGCAGAAGATGGCACTCTATGGAAAAAGACAGTCGCACTTCCAAAGGGTGTCGAACACAAATATCGCTATTTTACGGGGTTCTTTCTGGAATCTAAGAATGCAGGTGGCCCAGGTCAAGTGATAGTCAATAAATGGGAGACCCATCAGCTGCCTCGATCAGTGAGCCCAACAGAGTCAGACCAAACTATTGACGATGGGCAGTTTGGAGTCAGTGGTGGTATTGAATGTACAGATTCCGGCTGGTTGACATCTCAGACTGAAATTCGCCTCCGGCTCCATTACTCTATTAAGCCTCCAGTGTCCATTACTAAAATGAAATTTAAGAAATCTCGGTTCAGGCTGAAGTTGACATTGGAGGGTGTTGAGGAGGAAGAAGATGAGGAGAGCCCTTCATCCTGGCACAAGATGACCACCACACTTGAGATCAGTATGATCAGTGATAGTGGCTATAAGTCCCGACATTCCCAGCCAGAGTGTGGCTATTCCCTGGAACCAACAAAGTGGACTGAGTACAGCATTCACACCATGGACCCTGATAACCTGGAGCTCATCTTTGACCTCTTTGAGGAGGACTTGAGTGAGAAGGTTGTTCAGAGTGATGTTCACCCTGGCCTTGTTGGCACTGCCTGCCTCTTATCTTCGTCTTTCGTGGAAAGTGGCAAGGACAATGGAGTTGTTACCCTCCCCATCATGAGCAGAAATTCCAGGCAGACCATTGGCAAAGTTAGAGTGGATTATCTAGTTATCCGGCCCATTCAGGGCTTTCAATGTGACATGCACCAGTCCTTCAGCAAGTACTGGCGGAAAAGGAGTGCACTGGATGTGGGACACAGAGGAGCAGGGAGCTCACATGCTGCCAAACATCACAAAATCAGGGAAAACACAATTGCCTCATTTCTAAGTGCCGCAAACCACGGAGCCGCATATGTGGAGTTTGATGTTCATCTGTCCAAGGACTTTGTTCCAGTCGTTTATCATGATCTCACATGCTGTATTTCCACCAAGAAGAAAAATGACAAGAATTCCATGGTGCTGTTTGAAGTTCCTGTCAAAGATTTGACCTTTGACCAGCTTCAGCTTCTTAAGCTAGCCCACACAACAGCTATGAAGGTGCATGATCACAAAGacttagtagaagaggaggaggatatAGATGAACATCAGCCCTTTCCATCACTTACTCAGATATTTCAGGCTGTTCCAGAATCTGTGGGCTTTAATATTGAGCTGAAGTGGATATCCCAGTTAAAGGATGGTTCCTGGGATGCGAACTTATCCACTTACTTCAACATGAACCAGTTTCTTGACATCATTCTCACCTGCGTGCTTCAGAATGCTGGAAAGAGAAGGATCGTCTTCTCTTGTTTCGACCCCGATGTGTGTGCAATGGTGCGAAGGAAACAGAACAAGTACCCCATCTTGTTCCTGACTCAGGGCGTATCAGATGTCTACCCGGAGCTGATGGACATCCGTTGTCAGACAACCCAGATAGCCATGAGCTTTGCTCAAAGCGAGGACATTCTGGGTATCAGTGCTCACACTGAGGACCTGCTGCGTAATATGGACTGCATTAAGGAGGCTCAGTCCAAAGGCCTGGTAGTCTTCTGCTGGGGGGATGACAACAATGACCATGAGAACAGGAGAAAACTCAGGGAACACGGCATTAATGGCCTCATTTATGACAGAATTTGTGAAGGcttggtgcaaaatttcaatgCCTCAACTACCTCCAGTGCCAGTAACGTCTGCCAAGTTTCTGaATCTGTGATGACCAGCTCGAGCAGCCCAACATCTTCAAAGTAGAAGAGCAAGTATCTTTGAAGGAGGTAATTCCTGAGGAGACTCTGAAAAGCTGTGCCTGCTCCACGTACAGTATTCCCTGCACATCAGTACCCTGTTCGAGTAAAACTCAAGTTGGCAGCGGCGAGTCAGACTCGGGCCTCAGTTCATCCTGAGCTTGCAGCGTTCAGTCAACCTTTATACAAAATTCCATGTTTTCTACAAAGCAGTACAAATCACTCAACACA

Function

symbol description
gpcpd1 Predicted to enable glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in cytoplasm. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1).

NR:

description
glycerophosphocholine phosphodiesterase GPCPD1-like isoform X2

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:2001070 starch binding molecular_function
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K18695 GPCPD1; glycerophosphocholine phosphodiesterase GPCPD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686715.1 False 2258 mRNA 0.47 21 45451286 45465612
XM_022686721.1 False 2285 mRNA 0.47 21 45451286 45465611
XM_022686726.1 True 2332 mRNA 0.47 22 45451286 45465612

Neighbor

gene id symbol gene type direction distance location
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding downstream 3120 45441438 ~ 45448166 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding downstream 85440 45358910 ~ 45365846 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding downstream 136031 44983244 ~ 45315255 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding downstream 600193 44808826 ~ 44851093 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding downstream 691081 44737167 ~ 44760205 (-)
trmt6 trmt6,LOC107593280 coding upstream 36039 45501651 ~ 45512516 (-)
fermt1 fermt1,LOC106571740 coding upstream 49583 45515195 ~ 45531393 (-)
pak5 pak5 coding upstream 482416 45948028 ~ 46055938 (-)
LOC111194348 NA coding upstream 584222 46049834 ~ 46052723 (-)
LOC103025404 NA coding upstream 612596 46078208 ~ 46106169 (-)
G26386 NA non-coding downstream 41250 45408433 ~ 45410036 (-)
G26347 NA non-coding downstream 211068 45239901 ~ 45240218 (-)
G26345 NA non-coding downstream 290356 45142890 ~ 45160930 (-)
LOC111197337 NA non-coding downstream 337325 45112538 ~ 45113961 (-)
G26290 NA non-coding downstream 586220 44862184 ~ 44865066 (-)
LOC111191909 NA non-coding upstream 131975 45597587 ~ 45604161 (-)
LOC111197418 NA non-coding upstream 267704 45733316 ~ 45742850 (-)
G26563 NA non-coding upstream 377562 45843174 ~ 45844931 (-)
G26564 NA non-coding upstream 382005 45847617 ~ 45849592 (-)
G26612 NA non-coding upstream 601036 46066648 ~ 46067188 (-)
G26388 NA other downstream 13701 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 565485 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 580596 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 651781 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 1551526 43890629 ~ 43899760 (-)
G26588 NA other upstream 469541 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 826475 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 961805 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 1053259 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 1068083 46533695 ~ 46535835 (-)

Expression


Co-expression Network