lamp5 (lamp5,zgc:165600)


Basic Information

Item Value
gene id lamp5
gene name lamp5,zgc:165600
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45934474 ~ 45945832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686811.1
tttattataccagggctcagagatgtgcatccggacaggactaaaatcaCCTTACGACCAGTTCAGCGAAAACAGTACGAAATTCAGCCTGTagaacatctgagaaaaacacatacatggtcgttccggacgagaataaaatcacagagggcacccccataaaagagaaaattaccccaggaccccctgaggaACTAATCCCGTCCTGATAGGGCTTTAGCGATAGTTTAAGGCAGTGTTAAAGAGAATCTAGATTTACTTGAGGTGTTTTATGCAATCTGGAATAGGTCCTAGAATCACCTCTGCTAAAGCAGTCGTGTCCTCACACTGTGTTCAGGTGTCCCGGATGAACAGTGATGTCCTGTCCCACTCTGTACACTCTTCTTTACAtctgcagtttaatctgaattTACACTCTGCATTAGTCTTTCTCTCGTTcaggagctgtgtgtgtgttagagttgcagtgtgtgtgtgtgtgtgtgtgtaggtatagGGTTATTAAGGACGCAGCTTCGTCCTCGCACGGCTGAGCTCACACGTTACTGCGCTGCAGCGGAGGCCACAAACGCGCGCGCGGGAGCAGCTGCAGCCTcgcgggaggaggaggaggacgttGGGGGCGGGTgagcgcgtgtgtgtgcgtgttggaGAGGGGGGGTGCAGCTCTTCTCCTCACTGTCCCGTTCACAGTGCAGGTATGGGCAGAGCAGCAGTGCGGGACTAGAGCTGCGCGTGCTCACTGGAACATCTACTGGACAGCAGGACAGTGCCCTGCTGACCCTCCACCGGACCCTCTCTGACCCCCGCGCGCGCCCTTTACAGCGTTTCTTCATCCTTTAGAAAGCTCCACGGAGCTTCAGAGATCCTCACAGAGCTTCACAGATCTTCACACGGCTCCACGCGACTCTGTACGGAAGTGTGGCAGCGCGCGGAGTGCCCGGATGTTGCCTCACCTGCACCTGCTGCGGCCGCGATGATCGGCTCGTGACGCGCTCCACAGCGCAGCAGAGCGCCGGTGCCGTcagcgcgcgcgcacacacgcaTCCATTTCTGCGCGTGAGCGTGTAggcgcgcgtgtgtgtgagcGCGTGAGGAAGAGTGAAAGAGGGGGAGAGCACCATGGACAGCGCGGTGGGCTTCTGCGTGCTGGgatgtTTGCTCCTGTCTTCGGTTCTGCTGGCggagcaggaggtggagaaccTGTCCGGACTGTCCCCAAACCCGGACAAGGATATCTTTGTGGTCCGGGAGAATGGGACCACCTGTCTGATGGCTGAGTTCGCTGTCAGATTCCTCATCCCGTATGATGTGCTCGCGCTCAACGGAATTGATcTCATCACAGAGCAGGCATCTCTGGCCCTCCCCCGTGGCGCACGCATCGAGGGCTCGTGCGGCAGCACTGAGGCCGAGCTCCACATCTCTTGGGTAAACAACGCCTACACACTCCGCATCTACTTTACCAAGgagaAGCGCACTATGGGCAGTGATGGAAAAGCGAAGGAGACTGAGATTTGGAAGATGAGTAAAGTCCAGCTGGTGTACAACACCTCAGATACGACACACTTCATCAACGCTTACAACCCGGGGAAACACACAGCCAGCACCCATCGTCTCTCAGCGTTGGTGACTCCAGGAGGCCGGTCGTATGTGTGTGCGGCTCAGCAGACCCTAACCCTCATTTCCAGTGACCACCAGAAGGGCATCACCATCTACATGTCCGACATCCAGATCCAGCCTTTCGACATCAAAAGCGACTTTGTGTTCAGTGAACCATATAAGTGCATCACGGACCAGAGGGAGCGTCTGGAGGAGACTCTGCCACTGGTGTTGGGCCTCATCCTGGCTCTCATCATcgtcatcaccatcaccatctaCCACTTCCACCTCAAACTGACCGCGCAGCAGCCCCAGCTGCCCCGGGACCGCTCCCTCTACAAGAACATGTAAAGACTCTCTATGCACCGCGGCCGAGGCCAGCCATCAGGGGAACGAGCCAGTACCTGCAAACACTGCACCCTGCTGTCCAGGGACCTCACAAGCTTCCCCAGCTTATTCCTCCACTGCCTGACCTTCTGCTCCCTGCGTTATGATTTCGGGTCAATtcctctgtttttgtttgtcgGTTCTTAATTGTTTTGCACATGTGTaaatgtaaaggtgtgtaaactACCAAACAGATCACTGCTATATTTGATGCATTTATTGAATATGTCATGGTGTGAGCCATACCAGTGTCACTCAGTGTAAAGTGTGCCAAACTAAAGCTAATCCAGTTGTATTGTAAAGGTACAGAGGCTGTACAATGAAGCTATTTTAAAGCTTACTGTGCCATATGGCTGATGCAATGAAACAAGAGATAAATCATGCAACATTTTGTGTGCAAAATTCtattcaaaaataaattattttatgtctGTC

Function

symbol description
zgc:165600 Predicted to be involved in establishment of protein localization to organelle. Predicted to be located in bounding membrane of organelle; dendrite membrane; and growth cone membrane. Predicted to be active in late endosome membrane; lysosomal membrane; and plasma membrane. Orthologous to human LAMP5 (lysosomal associated membrane protein family member 5).
lamp5 Predicted to be involved in establishment of protein localization to organelle. Located in endoplasmic reticulum-Golgi intermediate compartment membrane; endosome membrane; and plasma membrane.

NR:

description
PREDICTED: lysosome-associated membrane glycoprotein 5

GO:

id name namespace
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0032584 growth cone membrane cellular_component
GO:0032590 dendrite membrane cellular_component
GO:0030425 dendrite cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686811.1 True 2421 mRNA 0.53 6 45934474 45945832

Neighbor

gene id symbol gene type direction distance location
plcb4 plcb4,LOC108258041 coding upstream 8373 45802754 ~ 45926101 (+)
LOC103021983 plcb1,LOC108258091 coding upstream 149020 45615562 ~ 45785454 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding upstream 363990 45560546 ~ 45570484 (+)
LOC103022161 NA coding upstream 432828 45495681 ~ 45501646 (+)
LOC103023922 NA coding upstream 493218 45433919 ~ 45441256 (+)
LOC103025099 LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090 coding downstream 123741 46069573 ~ 46076984 (+)
LOC103030371 NA coding downstream 186741 46132573 ~ 46134116 (+)
LOC103027027 LOC108444466 coding downstream 214819 46160651 ~ 46178257 (+)
LOC103027954 NA coding downstream 247197 46193029 ~ 46201498 (+)
LOC103028674 LOC108411639,LOC102297057 coding downstream 288847 46234679 ~ 46289280 (+)
G26390 NA non-coding upstream 395535 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding upstream 405889 45524488 ~ 45528585 (+)
G26322 NA non-coding upstream 821506 45111185 ~ 45112968 (+)
G26286 NA non-coding upstream 1068790 44865143 ~ 44865684 (+)
G26280 NA non-coding upstream 1079964 44853881 ~ 44854510 (+)
G26476 NA non-coding downstream 121056 46066888 ~ 46067187 (+)
G26477 NA non-coding downstream 134473 46080305 ~ 46083403 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 410053 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 418052 46363884 ~ 46409990 (+)
G26667 NA non-coding downstream 464599 46410431 ~ 46410875 (+)
LOC103033920 LOC108416105 other upstream 2440158 43490323 ~ 43494316 (+)
G25880 NA other upstream 2509568 43424392 ~ 43424906 (+)
G25879 NA other upstream 2512428 43421771 ~ 43422046 (+)
rps29 NA other upstream 2571030 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 2672375 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 582536 46528368 ~ 46549553 (+)
G26915 NA other downstream 2332435 48278267 ~ 48315894 (+)
G26995 NA other downstream 2609965 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 2632971 48578803 ~ 48618075 (+)
G27075 NA other downstream 2795382 48741214 ~ 48742439 (+)

Expression


Co-expression Network