LOC103042705 (samd15)


Basic Information

Item Value
gene id LOC103042705
gene name samd15
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46329406 ~ 46337541 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022687006.1
GTCAGAAAGCGGAATGGCGTTCCTTCAGTGGGGTGTTGAGGAGGTGGCGGAGTGGATAGAGTCTCTCGGATTCCCCCAGTATACGGCATGCTTCACTGAGAACCTCATCACAGGCAGAAAGCTAATTTATGTAAACTGCCGTTACTTGCCACGACTGGGAATGACTGACTTTCAACATATGAAGGCTATCTCAGCTCATGTCCGAGAGTTGCTTGGTGTCTCTGAGCCATTGTGGAGTCGCAGTATTGCAGACCCCCCACGGGACAACATGGGGATGTTTCTGGAAATAAAGAGCAGAACTGGGAACAGGGCTGATTCTCTCACTTACAAACAGTTCCTCAACGACCAGAAGGCCTGAGCACTTCAGCAGTTACGCAGTTTTTTACAAATGTACTACTACATTCTCAAGTGTGTGGCTGGAGGGCTTTCTCCCCATTCTTTTCCTTCAGTGTGAATCTGAAATTGTAAGGAATATAcaagagtatttaaaaaaatgatcctgcttttgttggagttacggtctttaatgttaatgtaaagctttgtactagattttggagcattgctgtgagggttTGACTGCATTCCGTGACGAGCGCTATTAAAGTTTGGATGTTGGACGATCACCACCCCACTTTATCTCAACCGCCGACTCAATGAGCACCATCattggaaaaaaacacaagctCATGATTATGTGATCCAGAaaatcctattctattggcaattcTTCAATACAGAGACAATACAAATCTTTATCAACAATtagtgcaacttaaagtagctgaatgtattAATTAgaaaagggtgtccacaaacatttagacatacAGTGTATTTGAAATCCATACATGAAGGCACTCTTATTGCCTACATCtgcttttttctcattttacagAATTTGTATGTCAACAGaaatacaatgttttatttcttaGTAATTCtaataattaacttttttacatttatttatatataacatatataaaatgttcCTGATATATTGGCATCATCATAATTACCTGATGTACATGAAAAATATGGGATATTGGCATTGGTCCAAAATTTCCATATTGCTGCATCCTTAATCACAACACGTTTTCCTGGCATACTGTGATGTGTGTCAGAGTGAAACACAATATTACAGAGAAATTCTGAGCAACATTTTCACACAGCGATAGGTGGGGGTGGTGAAATGTGATATTAATGGTTAGGATTCCTTCCCCCAACCATTGTGGGGAATAATCCAAGCTCATTACATTTTGATGGATTGCAGGAAAATAAGATTTTAATTATATGGCATGATTCACTGATGCTTAATATAACCAGACAAACCTGAACTGACAATGTGAAAAAGGGCAGGctgacttgactgagttaatcaaaaactttaatactgggaaagttttactgtgttaaaagtgaagccactatAGGTGCTTCGTCTAGCTTATGTGCAGAATGGTGTGTTACTCATCAATGTGTgtagcacattttttatttcagccagaAAAACTATATTCTGCTATATTGTAAGTAAACAGGGTTATACTGATTGTTGAGTCTTTGCATTTCAGATTTGCAGACTGTTTGCAAATGTAACAAGACGGCTGATAAAATTGTCTTCATTTCTATAGAATGGAATGGCATAAAACTACAGTGTCtgcttttctacagtcattggttTTACACACACCACTTGTTGGGGAAAGCTCTAAAATCTTATTTTGTTGTCTTGTCAGTGTGGTTGAACACGGGGCAGTGTGACCAATCAGTTTGTGTGAGATCTGATAGTGGGGGCCAGATGGGTGAGATATTGTACTTCTTAAGATGTGTAGACATTTAACTTTGCTTGATCCAAAATGTCACATTTGTACCATGTATACAGCatcaatcattaccacccacagtggacagtgcagtgagggctaatgatcatgac

Function

symbol description
samd15 Orthologous to human SAMD15 (sterile alpha motif domain containing 15).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 15 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022687006.1 True 1942 mRNA 0.39 3 46329406 46337541

Neighbor

gene id symbol gene type direction distance location
LOC103029737 lrfn5b,LOC108411613,LOC108257655,LOC107712211,LOC107564320 coding downstream 296 46317964 ~ 46329110 (-)
LOC103025714 NA coding downstream 200164 46108572 ~ 46129242 (-)
LOC103025404 NA coding downstream 223237 46078208 ~ 46106169 (-)
pak5 pak5 coding downstream 273468 45948028 ~ 46055938 (-)
LOC111194348 NA coding downstream 276683 46049834 ~ 46052723 (-)
LOC103043020 LOC103043020,LOC108411620,LOC108258012,LOC103375802 coding upstream 14668 46352209 ~ 46360826 (-)
LOC111194350 NA coding upstream 26588 46364129 ~ 46374917 (-)
LOC103044046 NA coding upstream 50118 46387659 ~ 46395067 (-)
LOC107197829 NA coding upstream 58958 46396499 ~ 46404613 (-)
actr10 actr10,LOC106608088,LOC106571574 coding upstream 72915 46410456 ~ 46416421 (-)
G26605 NA non-coding downstream 167307 46076136 ~ 46162099 (-)
G26612 NA non-coding downstream 262218 46066648 ~ 46067188 (-)
G26564 NA non-coding downstream 479814 45847617 ~ 45849592 (-)
G26563 NA non-coding downstream 484475 45843174 ~ 45844931 (-)
LOC111197418 NA non-coding downstream 586556 45733316 ~ 45742850 (-)
G26663 NA non-coding upstream 24177 46361718 ~ 46361918 (-)
G26666 NA non-coding upstream 58420 46395961 ~ 46409064 (-)
LOC111197648 NA non-coding upstream 240746 46578287 ~ 46599431 (-)
G26751 NA non-coding upstream 324578 46662119 ~ 46663963 (-)
G26771 NA non-coding upstream 767774 47105315 ~ 47106324 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 36600 46292087 ~ 46292806 (-)
G26588 NA other downstream 393784 45935153 ~ 45935622 (-)
G26388 NA other downstream 891821 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 1443605 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 1458716 44856099 ~ 44870690 (-)
naa30 naa30,LOC108270341 other upstream 89876 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 181330 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 196154 46533695 ~ 46535835 (-)
G26754 NA other upstream 366806 46704347 ~ 46738736 (-)
LOC103039734 LOC108424428 other upstream 1879965 48217506 ~ 48324662 (-)

Expression


Co-expression Network