LOC111188740


Basic Information

Item Value
gene id LOC111188740
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52362005 ~ 52364172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002648588.1
GATTGTGGAGCATTGTTTTTAGGATTTGACTGCTTTCTTTGATAAGCATTAGTGagttcaggatgttggatgatcaccactctACCTGATCCCCAGCTCCCCAACTCACCCATTCCAAAAGTATGGATGAAGCTAAACAGCTCAATACTGCAGGAAAGGAATTCATGAGGAATTGACCAAAATCCAAAGCAATCCAGGACAGACTGGGAGGAGTTTTGTCTCTCATGCATAAGTGGATgaagATAGTGTTCTTTAGTGTTTGTCACTCTAGACCCATAATTGGAAAACATTAGCAGGACATCAGTTCCAGACATTACCAAAAAGTGAAGGCAGATGGTGTTCTCTGAGGAAATGACACAGCTGAGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002648588.1 True 369 lncRNA 0.42 3 52362005 52364172

Neighbor

gene id symbol gene type direction distance location
LOC103029411 NA coding upstream 34203 52321992 ~ 52327802 (+)
tmx3 tmx3 coding upstream 666988 51586207 ~ 51695017 (+)
dnajc13 dnajc13 coding upstream 777908 51503220 ~ 51584097 (+)
rngtt rngtt coding upstream 1139932 51192823 ~ 51222073 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding upstream 1216610 51084068 ~ 51145395 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding downstream 3711 52367883 ~ 52374147 (+)
ddhd1 NA coding downstream 18773 52382945 ~ 52400818 (+)
LOC103030894 NA coding downstream 39710 52403882 ~ 52412080 (+)
trnac-gca_8 NA coding downstream 104600 52468772 ~ 52468843 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 210766 52574938 ~ 52609821 (+)
G27701 NA non-coding upstream 13749 52342948 ~ 52348256 (+)
G27684 NA non-coding upstream 46510 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 48771 52313035 ~ 52313234 (+)
G27681 NA non-coding upstream 50957 52310835 ~ 52311048 (+)
G27680 NA non-coding upstream 52067 52309727 ~ 52309938 (+)
G27716 NA non-coding downstream 15684 52379856 ~ 52381005 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding downstream 164556 52528728 ~ 52531000 (+)
G27772 NA non-coding downstream 239774 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding downstream 303163 52667335 ~ 52672114 (+)
G27834 NA non-coding downstream 540148 52904320 ~ 52904678 (+)
G27683 LOC108412685 other upstream 47739 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 271372 52083282 ~ 52090633 (+)
G27489 NA other upstream 1183631 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1589843 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1608044 50744883 ~ 50753961 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 90259 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 395941 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1258651 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1259010 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1259277 53623449 ~ 53623521 (+)

Expression


Co-expression Network