LOC111189610


Basic Information

Item Value
gene id LOC111189610
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56588694 ~ 56614067 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002648824.1
CCTGCATGAAGATGAACTCCCACTTTCTGGCGAAAGCTCTCTGCAGCCTGGCCAGGTTTTCCTGAAAATGAAAGAACACTGAGCCATGGCCCAATCGATGCTGTTGATGCTGTTGATTTTCCCCAGCCGGTCACTGATGAACGACTCTCAAGTTCACCTCCCCAATCATACACCGACGTGACCTGCATTTCTCCATCAGACAACAGCATCACCACAGCCGACAAACAATGAGCCAGTAATGCAGGAGGAAAAACAAGCTGTAGTCCTGAAACAAAATGATAATTACTGTTTGTTATGTTCTGTATCCCTTCCACACAGAGCAAACAAATACAAGGAAACACAAGAATAGGTTTTAATATGTGTTCACTgaaaaacatctttattttgGCCTCAACATGCGATGTTGAGTCAGAAGCAATTTAATACACTGCATTAACTGCACTCAGCCAGAAACATAAACCACTgcattaaatcacattaaattatatcTAAACCACAAGGTTTTCACATGTAGTGTCTAATATCTAGTGTTAGGGTCCACATCatgcttgtttgtttaatatagCATGTACACACTGTTAAACCTAAgacaaaaagtacattttctaaAGCAGATATGTGCTATTCTATGGATAaacctttatctgtttttgcaaatgaacTCTTCATGTGTAAACGTTGCTAAAACTGTAGTGTTTGCTCTTCAGTCTATTCAGcctacacattttattaaaatagctataATAGCCCATTGCAGCCAA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002648824.1 True 761 lncRNA 0.39 2 56588694 56614067

Neighbor

gene id symbol gene type direction distance location
LOC103033540 fntb,LOC108424508,LOC107668263,LOC107756604,LOC107721314,LOC107671778,LOC103359368 coding downstream 298856 56274486 ~ 56289838 (-)
LOC103029201 LOC103029201 coding downstream 336117 56240971 ~ 56252577 (-)
LOC103032431 LOC108424505 coding downstream 400839 56173457 ~ 56187855 (-)
gpr176 gpr176 coding downstream 417891 56153714 ~ 56170803 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107665399 coding downstream 463134 56055205 ~ 56125560 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 98550 56712617 ~ 56723774 (-)
rhov rhov,LOC107602886,LOC107659156,LOC107668201,LOC107562688,LOC107721274 coding upstream 141322 56755389 ~ 56758766 (-)
chac1 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 coding upstream 206418 56820485 ~ 56823051 (-)
dll4 dll4,LOC107562694,LOC107721368,LOC107602157,LOC107668208,LOC107739369 coding upstream 225682 56839749 ~ 56852430 (-)
LOC111189704 NA coding upstream 604843 57218910 ~ 57226087 (-)
G28728 LOC108415780 non-coding downstream 79006 56487213 ~ 56509688 (-)
G28657 srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313 non-coding downstream 348971 56232707 ~ 56239723 (-)
G28661 NA non-coding downstream 360840 56214544 ~ 56227854 (-)
G28634 NA non-coding downstream 398005 56190489 ~ 56190689 (-)
G28617 NA non-coding downstream 440956 56147176 ~ 56147738 (-)
G28813 NA non-coding upstream 210629 56824696 ~ 56825001 (-)
G28823 NA non-coding upstream 396410 57010477 ~ 57010707 (-)
G28938 NA non-coding upstream 1149434 57763501 ~ 57764257 (-)
G28959 prph2l,LOC108424527,LOC107711660,LOC107665408,LOC107569893,LOC107721267,LOC108258119,LOC107602225 non-coding upstream 1184024 57798091 ~ 57798381 (-)
G28960 prph2l,LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 non-coding upstream 1184995 57799062 ~ 57800871 (-)
G28536 NA other downstream 772096 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 947319 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 981808 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 1086934 55499900 ~ 55501760 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other downstream 1144025 55432081 ~ 55444669 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other upstream 26284 56640351 ~ 56694835 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 1198195 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 1377574 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 1545140 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 2318896 58932963 ~ 58934789 (-)

Expression


Co-expression Network