LOC111189782


Basic Information

Item Value
gene id LOC111189782
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57849734 ~ 57853758 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002648882.1
aattctgtgtgtgtattatgtttaGAATGTAGCAGAAACTTTACATATAAATTTAAGTCAACATTACAGAATTGAGCACACCAAATATTTAAAGTTTGGCACACCTCGTGTTGCAAAACACTAAAGTAAACTTCTGTTTTGTAATTGTGTGAGGAATATGTGtagtttgatttggttttggAGACTACTGAATTATGTgagcacaaaaaaatatgtttgcagCTGTTTCTTGAAAGAAGGTTGGGATCAGCATCCTTCTCCAGAAGGAACTGGACACAAGACAGATGTTTGCGGCCTACAGCCAAAATCAGCGGAGTCTGGTTCTTGAGAGTGCGAATGTTAATGGTCTGCGGTTCAGCTAAAGCAAAACCTTCAGACATTCAACATGGCCGTAATATGCAGTCTCGTGGAGAGATTCCACTGTAACCCGCAGGAATCCATTGTGTCTTGTCCAGGCGACTACCTGATTATTGTCTTTGCTGAAGTAATGGTTTTGAGC
>XR_002648883.1
GTACAATACCTCTTTACACTGGTggctatttagctagctagtgaGCTATGCTGTAGGTATAACTAgctagtaaataaacagtatatgTACATGTTGCTGAATGTATTAGGCAACTGGCTAGCTAGCTGTAGGTTTTCACAAGGTCAATTTGGTTCATTTGACCAAGCTAGCTCACTGGCTATTCGGCTAATGAATTCAGCAGCTGGCGTTAGCTAGCCTGAGTACTGAGGCTAATGGTTCTGCCTATTGGGTAGCCTGGCTGGTCCAGAGTCCAGAGTCACTAATGCTGCTAGCACAACGGCAGCTAGCTGTTGCTGTTAGCTGTTGCTAATGCCTCTGTCGCCacagcagGTTGGGATCAGCATCCTTCTCCAGAAGGAACTGGACACAAGACAGATGTTTGCGGCCTACAGCCAAAATCAGCGGAGTCTGGTTCTTGAGAGTGCGAATGTTAATGGTCTGCGGTTCAGCTAAAGCAAAACCTTCAGACATTCAACATGGCCGTAATATGCAGTCTCGTGGAGAGATTCCACTGTAACCCGCAGGAATCCATTGTGTCTTGTCCAGGCGACTACCTGATTATTGTCTTTGCTGAAGTAATGGTTTTGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002648882.1 False 499 lncRNA 0.40 4 57849734 57853758
XR_002648883.1 True 611 lncRNA 0.47 4 57849734 57853501

Neighbor

gene id symbol gene type direction distance location
LOC111194372 NA coding downstream 96591 57685492 ~ 57753143 (-)
LOC103043676 LOC108424526 coding downstream 194654 57607770 ~ 57655080 (-)
LOC103044195 NA coding downstream 359011 57450925 ~ 57490723 (-)
LOC103044876 NA coding downstream 403399 57440671 ~ 57446335 (-)
zbtb1 zbtb1,LOC107711663,LOC107668253,LOC107721384,LOC107602161,LOC107562689 coding downstream 418079 57425305 ~ 57431655 (-)
LOC103040793 LOC108411326,LOC107721373,LOC108257828,LOC107659193 coding upstream 207065 58060823 ~ 58076565 (-)
tmem251 tmem251 coding upstream 227912 58081670 ~ 58083483 (-)
chga chga coding upstream 282851 58136609 ~ 58149747 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding upstream 322051 58175809 ~ 58189729 (-)
LOC103038188 LOC108411316 coding upstream 338870 58192628 ~ 58198200 (-)
G28960 prph2l,LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 non-coding downstream 48863 57799062 ~ 57800871 (-)
G28959 prph2l,LOC108424527,LOC107711660,LOC107665408,LOC107569893,LOC107721267,LOC108258119,LOC107602225 non-coding downstream 51353 57798091 ~ 57798381 (-)
G28938 NA non-coding downstream 85477 57763501 ~ 57764257 (-)
G28823 NA non-coding downstream 839027 57010477 ~ 57010707 (-)
G28813 NA non-coding downstream 1024733 56824696 ~ 56825001 (-)
G28997 NA non-coding upstream 22513 57876271 ~ 57876745 (-)
LOC111189816 NA non-coding upstream 138645 57992403 ~ 57994113 (-)
G29085 NA non-coding upstream 148361 58002119 ~ 58057460 (-)
G29108 NA non-coding upstream 268706 58122464 ~ 58124565 (-)
LOC103035795 NA non-coding upstream 409486 58263244 ~ 58264118 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 8416 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1154899 56640351 ~ 56694835 (-)
G28536 NA other downstream 2033136 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 2208359 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 2242848 55602870 ~ 55606886 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 137883 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 305449 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 1079205 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 1144783 58998541 ~ 59085886 (-)
G29478 NA other upstream 1583842 59437600 ~ 59438298 (-)

Expression


Co-expression Network