LOC111189816


Basic Information

Item Value
gene id LOC111189816
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57992403 ~ 57994113 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002648892.1
aacagtttgtctgttcaaattgtgtagtaaacaaaaaatcgacaaaaatggagataagtgttttttataggacagcCACGATATGTAATTTATATAATggagaaaatgtttaaatagttgtaaatgtaaaatgcagGTTTGTTCTCTATAGAGAAGTGTTTTTGTCCCTCTTTACAGAAAACTTTAATTTAGCATGCAACTGAAAAAATGtgcagagttctcctttaaatgcaGTGGCTATATCTCAAAGGCAAGATGTGATACCATGTTAAGggaataaataatgttttgaaTATATAAGAAATGCAGAAACTGCAGTAAAAGCTAGCAGTTTAAATATTAATGATGTTTATATAGTTTGTGTGGAGTGCACAACGTACATacatattattttacataatgcatattttttacCTTAAATATACCTGATGAATTACATTCTCTAACTTATTATCAAGTCATTAATCAGTTGATTCAGGGGCACTTGGATAGAGAAGAGAGGAACTACTCTCTACAGAGAGAGCGCCGTATTCAGTAATTAGTGTTTAAGTACTTTAGTCTTTAATCTCATCATGTGAACAGCATGCATCgtcaaacacaaataaaaaaaa

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002648892.1 True 611 lncRNA 0.31 2 57992403 57994113

Neighbor

gene id symbol gene type direction distance location
LOC111194372 NA coding downstream 239260 57685492 ~ 57753143 (-)
LOC103043676 LOC108424526 coding downstream 337323 57607770 ~ 57655080 (-)
LOC103044195 NA coding downstream 501680 57450925 ~ 57490723 (-)
LOC103044876 NA coding downstream 546068 57440671 ~ 57446335 (-)
zbtb1 zbtb1,LOC107711663,LOC107668253,LOC107721384,LOC107602161,LOC107562689 coding downstream 560748 57425305 ~ 57431655 (-)
LOC103040793 LOC108411326,LOC107721373,LOC108257828,LOC107659193 coding upstream 66710 58060823 ~ 58076565 (-)
tmem251 tmem251 coding upstream 87557 58081670 ~ 58083483 (-)
chga chga coding upstream 142496 58136609 ~ 58149747 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding upstream 181696 58175809 ~ 58189729 (-)
LOC103038188 LOC108411316 coding upstream 198515 58192628 ~ 58198200 (-)
G28997 NA non-coding downstream 115658 57876271 ~ 57876745 (-)
LOC111189782 NA non-coding downstream 138645 57849734 ~ 57853758 (-)
G28960 prph2l,LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 non-coding downstream 191532 57799062 ~ 57800871 (-)
G28959 prph2l,LOC108424527,LOC107711660,LOC107665408,LOC107569893,LOC107721267,LOC108258119,LOC107602225 non-coding downstream 194022 57798091 ~ 57798381 (-)
G28938 NA non-coding downstream 228146 57763501 ~ 57764257 (-)
G29085 NA non-coding upstream 8006 58002119 ~ 58057460 (-)
G29108 NA non-coding upstream 128351 58122464 ~ 58124565 (-)
LOC103035795 NA non-coding upstream 269131 58263244 ~ 58264118 (-)
G29131 gmds,LOC107711642 non-coding upstream 318701 58312814 ~ 58385453 (-)
G29162 NA non-coding upstream 421051 58415164 ~ 58415433 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 151085 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1297568 56640351 ~ 56694835 (-)
G28536 NA other downstream 2175805 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 2351028 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 2385517 55602870 ~ 55606886 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 165094 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 938850 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 1004428 58998541 ~ 59085886 (-)
G29478 NA other upstream 1443487 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1512813 59506926 ~ 59552910 (-)

Expression


Co-expression Network