LOC111190190


Basic Information

Item Value
gene id LOC111190190
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60430861 ~ 60443507 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649037.1
ATATTTGTCCTttagaatgtgaaaatgtgcagCTGCTGAAATCAAACTGCTGTATTGCTGCTTGCTATGTGTGCagaggttgagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649037.1 True 109 ncRNA 0.42 3 60430861 60443507

Neighbor

gene id symbol gene type direction distance location
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding upstream 148971 60279839 ~ 60281890 (+)
LOC103035162 LOC108434989,LOC108258176 coding upstream 157572 60265837 ~ 60273289 (+)
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding upstream 339053 60061098 ~ 60091808 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding upstream 644200 59767382 ~ 59786661 (+)
LOC103031439 LOC108434977 coding upstream 665788 59753476 ~ 59765073 (+)
rd3l rd3l coding downstream 42396 60485903 ~ 60490965 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding downstream 89235 60532742 ~ 60599366 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding downstream 259575 60703082 ~ 60793830 (+)
LOC103031412 NA coding downstream 551420 60994927 ~ 61163598 (+)
trnad-guc NA coding downstream 1249706 61693213 ~ 61693284 (+)
G29679 NA non-coding upstream 48605 60382041 ~ 60382256 (+)
G29663 NA non-coding upstream 73979 60356477 ~ 60356882 (+)
G29662 NA non-coding upstream 77731 60351318 ~ 60353130 (+)
G29641 NA non-coding upstream 142768 60287867 ~ 60288093 (+)
G29639 NA non-coding upstream 144918 60282585 ~ 60285943 (+)
G29691 NA non-coding downstream 20470 60463977 ~ 60519867 (+)
G29772 NA non-coding downstream 246494 60690001 ~ 60690253 (+)
G29775 xrcc3 non-coding downstream 256838 60700345 ~ 60702123 (+)
G29812 NA non-coding downstream 384230 60827737 ~ 60827940 (+)
G29825 NA non-coding downstream 485615 60929122 ~ 60930577 (+)
nme6 nme6 other upstream 832529 59586709 ~ 59598332 (+)
atraid atraid other upstream 871099 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 1202021 59221266 ~ 59228840 (+)
G29382 NA other upstream 1209825 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 1318546 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 76835 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1482573 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2378236 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2482511 62926018 ~ 62931133 (+)
G30362 NA other downstream 2892227 63335734 ~ 63345693 (+)

Expression


Co-expression Network