LOC111191374


Basic Information

Item Value
gene id LOC111191374
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72877044 ~ 72877730 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649470.1
tactGCCAGTAATATTGGAGAGAGGAGTGGAGTTACAGttATTTAAGGAGACCGAGGCCAGTGGAAGAGCGTGTAGAGGCATTTGCAGACATAATTACTGAGCAAACTACAAGGAGGGATGTCTGGAGACAACCATATGGTGTAGCCACTGTTTTTCCCATATCtgtttatgcttttattttattttctttgacaTCTCAGACTCTAAAGGGTATCTTGGTCTTATATAAGAAGGTTCTGCTCCTTGTAATGCTAATGGGCTATTAATGATCattttaattagttgagtaCAGTTTAATATTTACAGCTATCTATTTAGAcctcttttaatatttgtagtatattttattgatataaTGTACTTATAACTTTTGGGCACTGCCTGTTTGTTAGGTGGGCTATTccctta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649470.1 True 409 lncRNA 0.36 3 72877044 72877730

Neighbor

gene id symbol gene type direction distance location
LOC103025777 mep1a coding upstream 29230 72833413 ~ 72847814 (+)
LOC103025272 LOC108440976 coding upstream 45429 72823559 ~ 72831615 (+)
LOC103024428 LOC103024428,LOC108440977 coding upstream 54767 72815642 ~ 72822277 (+)
tdrd6 NA coding upstream 73255 72786996 ~ 72803789 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding upstream 99987 72743018 ~ 72777057 (+)
opn5 opn5 coding downstream 341796 73219526 ~ 73247185 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding downstream 937240 73814970 ~ 73820823 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding downstream 1001936 73879666 ~ 73884428 (+)
LOC103035930 tpr coding downstream 1030132 73907862 ~ 73931368 (+)
scyl3 scyl3,LOC104956565 coding downstream 1068348 73946078 ~ 73954704 (+)
G32769 NA non-coding upstream 32648 72841851 ~ 72844396 (+)
G32716 NA non-coding upstream 175238 72701522 ~ 72701806 (+)
G32713 NA non-coding upstream 179279 72697449 ~ 72697765 (+)
G32644 NA non-coding upstream 250359 72626396 ~ 72626685 (+)
G32630 NA non-coding upstream 281366 72565009 ~ 72595678 (+)
G32787 NA non-coding downstream 67084 72944814 ~ 72945464 (+)
G32793 NA non-coding downstream 103282 72981012 ~ 72984863 (+)
G32778 NA non-coding downstream 169272 73047002 ~ 73079574 (+)
G32806 NA non-coding downstream 183975 73061705 ~ 73062665 (+)
G32885 NA non-coding downstream 384585 73262315 ~ 73264493 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 90681 72781793 ~ 72786363 (+)
G32641 NA other upstream 280107 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 379980 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 896681 71463100 ~ 71980363 (+)
G32229 NA other upstream 1707488 71167524 ~ 71169556 (+)
cd2ap cd2ap other downstream 266920 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 561326 73439056 ~ 73506987 (+)
selp NA other downstream 1110771 73988501 ~ 74016347 (+)

Expression


Co-expression Network