LOC111191733


Basic Information

Item Value
gene id LOC111191733
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37616778 ~ 37620270 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649623.1
CGTTTTAGGGAACATGCTGCCAGATGAATAGGGctagagaaaaaaagataaacaaaactgtcaatAGCCATATTTTGCatgaatacattaaatacattataagcaTGCCTTAAATAACAAATAGTGATTTTTGCGTGTCTGGGGAATGAGATATTCTTATCCGTGTTTTATCTCCTGCCCTTGCTGCTCTGCACTGGCAGAAGGCGTTGCATCATTTCATTTGGGGTCGAGTTTCTATGTGATATGAGCAGGCTTCGGGCTGAGAGTGAGCTGTGTTCatcttcctttttttcatttgatcTGCTGCACACCATCCTTTTTGGAGACTGCTGTGCTGCACCTATCTAAACCACCATTCCCTATTTTATGGACGGAAAGCTGCAAGTTTACAATCTTCTCTTGTAATAAGGCCCAAGTCCCCTGGACCCTCATGGACCCAGCAGGCAGAAGTCTGGATCTTCAGACTGGGTTTTACCCAgTGAAATGTCATTGTTGGAGACCACTATGTGCTCCTCACCTCACTGAGCGGTTATTCTTCATTCGTCTTGGACCTACTGCTACTGCTTGTGAAGGAAAGGTAAGTAGGGAAGGCTGTGGTGTAGTATTAACAAGCTATATGAAGAACAGATAACTGCACTGTAACCTACATTCGTTCCCTGTTAAAAGAttgagaaaaatgttttatttaagatggtgtttgatggtcaaggtggttgACCAGTTTCATCAAAGAACACATAGTGTGGACAACCATCTACTTTTCGAATTAAACATGCTAATACCATTCGACTGCAATGACAATGTGCCCTGCTTACTGTGCTGCAGTCCAAAGATGTTGATTCAGTGTGTTGTAGCATTAGATTACATTtagcaatatatttattttgacagTCTA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649623.1 True 895 lncRNA 0.41 4 37616778 37620270

Neighbor

gene id symbol gene type direction distance location
igbp1 igbp1 coding upstream 98911 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 112825 37497889 ~ 37503953 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding upstream 126545 37438083 ~ 37490233 (+)
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding upstream 613003 36983182 ~ 37003775 (+)
stard8 stard8 coding upstream 819882 36672971 ~ 36796896 (+)
LOC103021778 NA coding downstream 13511 37633781 ~ 37637628 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding downstream 348964 37969234 ~ 37975259 (+)
LOC103045011 LOC103045011,LOC108414810 coding downstream 364442 37984712 ~ 37988933 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 724119 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 761320 38381590 ~ 38400321 (+)
G24237 NA non-coding upstream 4177 37612171 ~ 37612601 (+)
G24231 NA non-coding upstream 31488 37582120 ~ 37585290 (+)
G24228 NA non-coding upstream 39886 37571254 ~ 37576892 (+)
G24219 taf1,LOC108412743,LOC107596195,LOC105893216 non-coding upstream 64525 37551538 ~ 37552253 (+)
G24188 NA non-coding upstream 124500 37487138 ~ 37492278 (+)
G24242 NA non-coding downstream 25808 37646078 ~ 37651113 (+)
G24253 NA non-coding downstream 101666 37721936 ~ 37724137 (+)
G24271 NA non-coding downstream 143105 37763375 ~ 37764318 (+)
G24317 NA non-coding downstream 235172 37855442 ~ 37857225 (+)
G24324 NA non-coding downstream 243092 37863362 ~ 37864909 (+)
ar ar,LOC108443198 other upstream 1157849 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1520052 36043431 ~ 36096726 (+)
trdn NA other upstream 2314431 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 3652270 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 3836875 33777942 ~ 33779903 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 308085 37928355 ~ 37933989 (+)
G24390 NA other downstream 472704 38092974 ~ 38098324 (+)
G24431 NA other downstream 612323 38232593 ~ 38237041 (+)
G24463 NA other downstream 739065 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 739190 38359460 ~ 38379336 (+)

Expression


Co-expression Network