LOC111191909


Basic Information

Item Value
gene id LOC111191909
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45597587 ~ 45604161 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649723.1
TGCAGTGTCGACTCCGTCCGccctgtttttaaatctgagcaCTGGAACTCTGAGCTGGTCAAACGCATCATGGAATTACTTTTTCTGTGTGAAGATGAGTGGTGAGGATGCTACCGGAGACAGGTGTCGATGAGAATCAGATCAAGAATCAAGGACCCCTGGCCCCAGGATGACTCTTGGTCTCTACAAAGACCTTGAGAACCTGGGTGGCTCGCCCACTGCCATTCTTATAGGAACCAGATGTTTCCAGTGAAGCTTACGAAAATCTGACCAGCTCAGG

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649723.1 True 280 lncRNA 0.50 4 45597587 45604161

Neighbor

gene id symbol gene type direction distance location
fermt1 fermt1,LOC106571740 coding downstream 66194 45515195 ~ 45531393 (-)
trmt6 trmt6,LOC107593280 coding downstream 85071 45501651 ~ 45512516 (-)
gpcpd1 gpcpd1,LOC107697181 coding downstream 131975 45451286 ~ 45465612 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding downstream 149421 45441438 ~ 45448166 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding downstream 231741 45358910 ~ 45365846 (-)
pak5 pak5 coding upstream 343867 45948028 ~ 46055938 (-)
LOC111194348 NA coding upstream 445673 46049834 ~ 46052723 (-)
LOC103025404 NA coding upstream 474047 46078208 ~ 46106169 (-)
LOC103025714 NA coding upstream 504411 46108572 ~ 46129242 (-)
LOC103029737 lrfn5b,LOC108411613,LOC108257655,LOC107712211,LOC107564320 coding upstream 713803 46317964 ~ 46329110 (-)
G26386 NA non-coding downstream 187551 45408433 ~ 45410036 (-)
G26347 NA non-coding downstream 357369 45239901 ~ 45240218 (-)
G26345 NA non-coding downstream 436657 45142890 ~ 45160930 (-)
LOC111197337 NA non-coding downstream 483626 45112538 ~ 45113961 (-)
G26290 NA non-coding downstream 732521 44862184 ~ 44865066 (-)
LOC111197418 NA non-coding upstream 129155 45733316 ~ 45742850 (-)
G26563 NA non-coding upstream 239013 45843174 ~ 45844931 (-)
G26564 NA non-coding upstream 243456 45847617 ~ 45849592 (-)
G26612 NA non-coding upstream 462487 46066648 ~ 46067188 (-)
G26605 NA non-coding upstream 471975 46076136 ~ 46162099 (-)
G26388 NA other downstream 160002 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 711786 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 726897 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 798082 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 1697827 43890629 ~ 43899760 (-)
G26588 NA other upstream 330992 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 687926 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 823256 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 914710 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 929534 46533695 ~ 46535835 (-)

Expression


Co-expression Network