LOC111191935


Basic Information

Item Value
gene id LOC111191935
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58721572 ~ 58722930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649732.1
TCAGATCCTGGTTCTGTATCTTCCAACTTGTTCAGAAAAGCATGCACTGGGTTTATTGGTCttgcactttatttatttcccagaGTCTGTGATGCCCGAGGCTCTAGTAGATGGGAGATCTCAATTCATCTGTGCAGTGGTGAGACTTGGCTGCGAGGAGAGATGCCAACGCTTTTTCAAATTGCTCTGAGAAGATTTTGAAGAGGCATGCAATCCACAgtaTCCTGCTCAGTCCCATTGAAACAATCAAGACCCTAGCCATGCAGTTCGCCTTAACAGACATTAGTGAAAGAAGGCTGTATCAACAACATCAAATATTATCAGGCACCTGAAAAATCTCCCAGAGAGGTCTGTCACATTAGCACATGTCAACAGTTAGCAAACATGCTTAGATCATTATCAACCATGTGAAGATAACTTAGTGTGCAACTAGCTTTGTAACTGAATATTTGAAAAGTTGAGTGAAATGTTAGTTTGCTTGTCTCACTTGTTTGCATTGAGTGGCATTGACATGACGTTAAAAAGTGTTGGACTCATGACCAAAAACTTGAGACTTCACTTGGATGCATGAGCAaaaacttgagacttgacttggactcatgacaaaacacttaagaCTTGACCTGGATTCATGAGCAAAGACTTAAAACTTGGCCTTAAATTCATGACCAAAAACTTGACTTGGATGCATGAGcaaagacttgaaacttgacttggactcattACAAAACACCTAAGACTTAACATGGAATCATGACCAAAGATTTGAGACTTGGCTTGGACTCATGACCAAAGATTTGAAACTTGACATTGGACTTGCAATAAAAGACTTGTGAATATCTCTGATGAAAACTAGAAAACTCTAGAGTGGaaagagaataaataaactgaaaatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649732.1 True 897 lncRNA 0.39 4 58721572 58722930

Neighbor

gene id symbol gene type direction distance location
LOC103031977 NA coding upstream 213097 58504802 ~ 58508475 (+)
exoc2 exoc2,LOC107721345,LOC107659211,LOC107711641,LOC107665386 coding upstream 240785 58457954 ~ 58480787 (+)
gmds gmds,LOC107711642,LOC107721371 coding upstream 336052 58321035 ~ 58385520 (+)
LOC103034955 LOC108257896,LOC106584199 coding upstream 404093 58282590 ~ 58317479 (+)
LOC103036000 NA coding upstream 460131 58247781 ~ 58261441 (+)
LOC103021664 LOC108411900,LOC108257513,LOC107684818,LOC107746282,LOC107723542 coding downstream 81317 58804247 ~ 58819777 (+)
LOC103021996 NA coding downstream 142670 58865600 ~ 58882191 (+)
LOC103037011 NA coding downstream 174407 58897337 ~ 58908006 (+)
LOC103022293 eif5,if5,LOC103022293,LOC108435020,LOC107723356,LOC106610956 coding downstream 202446 58925376 ~ 58934791 (+)
LOC103022804 LOC108435018 coding downstream 231171 58954101 ~ 58963663 (+)
G29193 NA non-coding upstream 201077 58520164 ~ 58520495 (+)
G29192 NA non-coding upstream 201492 58519879 ~ 58520080 (+)
G29191 NA non-coding upstream 203674 58517676 ~ 58517898 (+)
G29157 LOC106581475 non-coding upstream 272932 58448369 ~ 58448640 (+)
G29156 NA non-coding upstream 274211 58446904 ~ 58447361 (+)
G29241 NA non-coding downstream 1698 58724628 ~ 58724925 (+)
G29251 NA non-coding downstream 56184 58779114 ~ 58779952 (+)
G29263 NA non-coding downstream 101319 58824249 ~ 58825736 (+)
G29267 NA non-coding downstream 127047 58849977 ~ 58850430 (+)
G29276 NA non-coding downstream 137570 58860500 ~ 58860827 (+)
G29155 foxq1 other upstream 302755 58417394 ~ 58418817 (+)
LOC103042006 NA other upstream 909084 57802891 ~ 57812488 (+)
G28865 NA other upstream 1319180 57401925 ~ 57402392 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 2015480 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 2267638 56337156 ~ 56453934 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 341543 59064473 ~ 59112315 (+)
G29382 NA other downstream 497602 59220532 ~ 59221036 (+)
LOC111194375 NA other downstream 498336 59221266 ~ 59228840 (+)
atraid atraid other downstream 831355 59554285 ~ 59559762 (+)
nme6 nme6 other downstream 863779 59586709 ~ 59598332 (+)

Expression


Co-expression Network