LOC111191941


Basic Information

Item Value
gene id LOC111191941
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63297863 ~ 63298732 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649739.1
CATCTAAGTTGGAGGAAGGGAAGATCGGAGTGTTGGATGCAGAACTGGCAGTCCCTTATGGATTCCTGTGCTATGGATATTCTCACCTGATAAAACATGCAGGAACAACTATGAAGAATCTGATTGACAAATCCGCTGCCCTCCAACTAAAGAGCTAATAAATCCAAACCACTGAGACATACCCACATTCAGCTCCacaataattagaataattcaTCTCTCCATGTTTGatctataatttaaaatgtatcgctgtttctgtctctctgtttctgcttGAGTGGGTGAGACAGCGAGGAGCAGTGAGTGCAGGACATCCGCTGGGCTGTTAGACTGCATAGAGAAGAGATCAGCTTGGCTGAACTTGGTGTAGGCCTGGGTGAACGTAGGTTGTTGCGGCAACTGGGGAACCATTGGAGGACTGcaagacaaaatataaaaaaagaaaacaggaaagATGGAAAAACAggaaagagtgaaaaaagaacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649739.1 True 490 lncRNA 0.43 3 63297863 63298732

Neighbor

gene id symbol gene type direction distance location
ociad1 NA coding upstream 2140 63290134 ~ 63295723 (+)
zar1 zar1 coding upstream 163126 63132960 ~ 63134737 (+)
slc10a4 slc10a4 coding upstream 166763 63123306 ~ 63131100 (+)
slain2 slain2 coding upstream 186204 63087980 ~ 63111659 (+)
anapc4 anapc4,LOC107665412,LOC107683992 coding upstream 210881 63066520 ~ 63086982 (+)
ociad2 ociad2 coding downstream 9217 63307949 ~ 63314957 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding downstream 19920 63318652 ~ 63334868 (+)
spata18 spata18,LOC107683994,LOC107601933,LOC107755228 coding downstream 66942 63365674 ~ 63379522 (+)
rasl11b rasl11b,LOC107718428,LOC107601936 coding downstream 222813 63521545 ~ 63524944 (+)
fip1l1 NA coding downstream 466037 63764769 ~ 63822100 (+)
G30335 NA non-coding upstream 9729 63263950 ~ 63288134 (+)
G30314 NA non-coding upstream 147648 63149666 ~ 63150215 (+)
G30311 NA non-coding upstream 155195 63139298 ~ 63142668 (+)
G30280 NA non-coding upstream 180448 63116862 ~ 63117415 (+)
G30168 NA non-coding upstream 493109 62803591 ~ 62804754 (+)
G30383 NA non-coding downstream 135099 63433831 ~ 63435982 (+)
LOC103041812 NA non-coding downstream 167511 63466243 ~ 63468751 (+)
G30393 NA non-coding downstream 228789 63527521 ~ 63550200 (+)
G30517 NA non-coding downstream 1007383 64306115 ~ 64306424 (+)
G30539 NA non-coding downstream 1123769 64422501 ~ 64422895 (+)
LOC103035278 NA other upstream 366730 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 444575 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 1361780 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2772812 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 3699531 59586709 ~ 59598332 (+)
G30362 NA other downstream 37002 63335734 ~ 63345693 (+)
kit kit other downstream 932512 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 1723687 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 1779048 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 1799770 65098502 ~ 65098573 (+)

Expression


Co-expression Network