LOC111191948


Basic Information

Item Value
gene id LOC111191948
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67685366 ~ 67686312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649744.1
AACAAATAAGTTTAGAAGGTGGGCACTAGGACCTGGCCTGGGAGAGTTGAGGGCTAATGGGCAACCTGCCCCCTTAAGAATAAAAGGACGGTGAAGCGGGAAGCTGCAGGTGTGCTCGTTAGTGGGGAGAGTACCTGGTCTCCATTACGTGCTTGGGCAGCAGCAGAACGAGAAGgTGCTGCTGGATAGTgcagtttttaatgatttagcTGCTGTTGGTGTGCATGTGGGAGAGGAGCGGAGACAGAGCAGAGAACTGTTTTGGGCAGGTGCTGCTGTTTCACTCGACTCGCATCATACATTGGAAAGAGtaTTCATTGTCCAAGTTCACAAGAAGGCTGGGGTGCTCCTGATTTTCCCTTTTCCCTCCATGTGCTTAGAGGATGTCTCAAGACTGCAAGggtatgtaatattttaaagttggttgagcaaataaatataagtaaataaatgttgaataatTGTGTGTCTTGGCTGGACGTGTGCATGGCTGAAAGTTGAGAATATTGGCCACTGTTTTCTTGACGGTTCTCTACTGTTTTCTTGATGGTTTTCTACTGTGTTTTTGATGGTCCTTTATTGTgttgtgtcttatttttttaatagttttctgTATTGTTTCCTTTACTGATTTAGTTTTCTGCAGTTTCAttgtaaattctttttttttgatactttatttttttgtcattgtttCTGGCTATGATTCATGGCATACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649744.1 True 720 lncRNA 0.42 3 67685366 67686312

Neighbor

gene id symbol gene type direction distance location
trnat-agu_1 NA coding downstream 26715 67658579 ~ 67658651 (-)
trnai-aau_2 NA coding downstream 27113 67658181 ~ 67658253 (-)
trnai-aau_1 NA coding downstream 27668 67657626 ~ 67657698 (-)
trnai-aau NA coding downstream 27829 67657465 ~ 67657537 (-)
LOC103030302 ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107726450,LOC107553504 coding downstream 79190 67585111 ~ 67606176 (-)
LOC103045211 NA coding upstream 166245 67852557 ~ 67853773 (-)
LOC103046427 LOC108439583 coding upstream 281824 67968136 ~ 67972358 (-)
LOC103046744 NA coding upstream 286913 67973225 ~ 67981928 (-)
mycn LOC108439586 coding upstream 537512 68223824 ~ 68229829 (-)
ddx1 ddx1,LOC107726609 coding upstream 653513 68339825 ~ 68351833 (-)
G31482 NA non-coding downstream 26281 67657575 ~ 67659085 (-)
G31480 NA non-coding downstream 30749 67654150 ~ 67654617 (-)
G31385 NA non-coding downstream 369193 67315844 ~ 67316173 (-)
G31352 NA non-coding downstream 481117 67203958 ~ 67204249 (-)
G31329 NA non-coding downstream 562426 67122629 ~ 67122940 (-)
G31546 hmcn1,LOC106560561 non-coding upstream 147111 67833423 ~ 67835048 (-)
G31523 hmcn1,LOC107599116 non-coding upstream 156972 67843284 ~ 67889027 (-)
G31564 LOC108439581,LOC108256302,LOC106571171 non-coding upstream 229147 67915459 ~ 67920354 (-)
G31572 NA non-coding upstream 256185 67942497 ~ 67942707 (-)
G31573 NA non-coding upstream 256597 67942909 ~ 67943153 (-)
G31437 NA other downstream 157029 67503749 ~ 67528337 (-)
G31424 NA other downstream 252942 67423872 ~ 67432424 (-)
LOC103031958 myo6 other downstream 641048 66862465 ~ 67044318 (-)
trnad-guc_8 NA other downstream 2587693 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 2592217 65093078 ~ 65093149 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 169294 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 246248 67932560 ~ 67940713 (-)
G31622 NA other upstream 404908 68091220 ~ 68091581 (-)
fam84a fam84a other upstream 1139677 68825989 ~ 68829020 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 1458996 69145308 ~ 69161904 (-)

Expression


Co-expression Network