LOC111194833


Basic Information

Item Value
gene id LOC111194833
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8715728 ~ 8716797 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651305.1
TTCAGGATAATGCAACAGGAACAGGAACCCTGACCATTAGTCCTGTAAACTCCCAGGATGCTATTTGGTATCGGTGTACAGTGCAAACTGGAAATGTGAAATATTGCTCTGAAGTATATCTAAAAGTTAAAGATGAGCCTCCAGTTCAGCACCTCACTAAAGGCTGTACAATTATTGATCCATTTCATGCCGTGGTCAACTCAACCCTCACATATTCTGCCCCTGTACCACATCCTAATGCCACACAGATCGTGTGGGGGATCAATGAAGGAGATCAGGTAGTTCCTATAACCCGCTGCCCTTCACTCTGCTCCTCCAGTACAACTCGGAGACCCCTGTGTGAGAGAGTTCAGACAGTAGAAGATGCTGCATCAGGGAAATCATCACTGACTATCAGTCCTGTAGAGGAAACAGATACTTCGTGGTTATCGTTCATTGTGAATGCTTCTTCATGCTACACATTTATGCTTACTGTCAAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651305.1 True 481 lncRNA 0.45 3 8715728 8716797

Neighbor

gene id symbol gene type direction distance location
LOC103039953 NA coding upstream 4434 8703321 ~ 8711294 (+)
fzd6 fzd6 coding upstream 42152 8658419 ~ 8673576 (+)
nipal2 nipal2,LOC107731686,LOC107594621,LOC107705020 coding upstream 129305 8576987 ~ 8586423 (+)
LOC111191961 NA coding upstream 546919 8164745 ~ 8168809 (+)
hus1 hus1 coding upstream 556253 8149000 ~ 8159475 (+)
LOC111191756 NA coding downstream 16918 8733715 ~ 8738266 (+)
LOC103029568 ptrfb,LOC103029568,LOC108426559,LOC108256430,LOC107550021 coding downstream 65634 8782431 ~ 8811493 (+)
LOC103031465 NA coding downstream 117745 8834542 ~ 8842882 (+)
LOC103030220 rpgrip1,LOC107664673,LOC107742250,LOC107550023 coding downstream 127701 8844498 ~ 8868718 (+)
LOC103030535 NA coding downstream 162788 8879585 ~ 8889395 (+)
G17417 NA non-coding upstream 25694 8668990 ~ 8690034 (+)
G17403 NA non-coding upstream 78875 8636622 ~ 8636853 (+)
G17402 NA non-coding upstream 82164 8633079 ~ 8633564 (+)
LOC111194819 NA non-coding upstream 85645 8627378 ~ 8630083 (+)
G17329 NA non-coding upstream 529719 8185395 ~ 8186009 (+)
G17421 NA non-coding downstream 30072 8746869 ~ 8749634 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding downstream 55050 8771847 ~ 8773763 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding downstream 156135 8872932 ~ 8877126 (+)
LOC111194870 NA non-coding downstream 211895 8928692 ~ 8931760 (+)
LOC111194882 NA non-coding downstream 356697 9073494 ~ 9074499 (+)
LOC103041197 NA other upstream 530891 8168839 ~ 8184837 (+)
LOC103032995 NA other upstream 1286337 7422571 ~ 7429391 (+)
G16820 NA other upstream 2182860 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 2537844 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 4198419 4515997 ~ 4517309 (+)
LOC111191971 NA other downstream 174447 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 183143 8899940 ~ 8904004 (+)
G17443 NA other downstream 199789 8916586 ~ 8950159 (+)
G17745 NA other downstream 1564427 10281224 ~ 10281976 (+)
G17904 abr other downstream 2461111 11177908 ~ 11190080 (+)

Expression


Co-expression Network