LOC111194942


Basic Information

Item Value
gene id LOC111194942
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11855606 ~ 11855851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651390.1
TTTCAAACTAGTAAGAGAGGCGCATGTGTTAAGTCCTCTTGTGTATCCAGCTTCATCTTCCTGTGTAACCCTCTAAAGAAGCTTTGTTTtttcaCACTTTCTGTATGGAAGTACTCAGCTTCATTAAACGGACAAGATTACTTCATGCTCCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651390.1 True 155 ncRNA 0.39 2 11855606 11855851

Neighbor

gene id symbol gene type direction distance location
pex12 pex12,LOC107681885,LOC107710733,LOC107685880,LOC107587685 coding upstream 74255 11777403 ~ 11781351 (+)
gas2l2 NA coding upstream 172893 11670437 ~ 11682713 (+)
LOC103041104 NA coding upstream 186456 11665154 ~ 11669150 (+)
LOC103043684 snaa,napaa,LOC103043684,LOC108428316,LOC107740516,LOC107587681,LOC107681892 coding upstream 224823 11625778 ~ 11630783 (+)
LOC111194924 NA coding upstream 235919 11608190 ~ 11619687 (+)
ncf1 ncf1 coding downstream 27901 11883752 ~ 11891301 (+)
LOC103024427 NA coding downstream 37567 11893418 ~ 11896058 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107681900,LOC107712126 coding downstream 45077 11900928 ~ 11916057 (+)
LOC103023276 NA coding downstream 116572 11972423 ~ 11987425 (+)
ltbp3 ltbp3,LOC107665902 coding downstream 371652 12227503 ~ 12299623 (+)
G18096 polr2j,LOC107587688,LOC107595521 non-coding upstream 2768 11849742 ~ 11852838 (+)
G18073 bckdk,LOC107681895,LOC107685622 non-coding upstream 28294 11802497 ~ 11827312 (+)
G18071 orai2,LOC103026696,LOC108428392,LOC108259892 non-coding upstream 59464 11792807 ~ 11796142 (+)
G18066 ap2b1,LOC102204550,LOC106603458,LOC103476383,LOC107685655,LOC100380745 non-coding upstream 81386 11773069 ~ 11774220 (+)
G18060 ap2b1,LOC106603458,LOC100380745 non-coding upstream 104793 11746589 ~ 11750813 (+)
G18159 NA non-coding downstream 340282 12196133 ~ 12196334 (+)
G18171 NA non-coding downstream 466456 12322307 ~ 12322507 (+)
G18175 NA non-coding downstream 525229 12381080 ~ 12383478 (+)
G18180 NA non-coding downstream 668209 12524060 ~ 12525576 (+)
G18194 NA non-coding downstream 683475 12539326 ~ 12539719 (+)
G17904 abr other upstream 665526 11177908 ~ 11190080 (+)
G17745 NA other upstream 1573630 10281224 ~ 10281976 (+)
G17443 NA other upstream 2905447 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 2951602 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 2955961 8891244 ~ 8899645 (+)
G18332 LOC107710578 other downstream 1111712 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 1188980 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 1240859 13096710 ~ 13128508 (+)
G18413 LOC103047348,LOC108437052,LOC108260116 other downstream 1358797 13214648 ~ 13224093 (+)
G18416 LOC103046837,LOC108437054,LOC108260117,LOC107548478,LOC107700237,LOC107746364 other downstream 1377344 13233195 ~ 13237037 (+)

Expression


Co-expression Network