LOC111195805


Basic Information

Item Value
gene id LOC111195805
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 30516195 ~ 30519886 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651834.1
CAGCACCAGCTTCTCTAAACGCTCTGGTTTATCAATCCTGGCCATGCTCTTCTCCAAGAAGGACATCACACTGGACCAAAGGGTGAAAGATGTACCACAGTCAGCTCTTCCAGATGCTCACGCTGCAGATCCTTCTCAGTGGAACCTGAACAGCCCATTCCCGCTAACCCacaatagaataaaactaaaaatgctGTAGATGTGGGTTAAAGTAGCAAGAAAACACCAGCATAAACAACaatcaataaacaaatgaataattcatttttaaataaataaactgtactGTAGGTAAAATGTAGAACATCAGTCAAAACATTGCTTCAATATTAATAAGCGAATCACATCGTTCTAGTTCTGCCTGTCCTACACCTGACCTCAGTTCAAAGTGGCTACGTGCGCCAGGTCCATAAAAAAGCCTTCACCGAGCTGATAGATTTGCATAAGATTTACATATTACGACCGCATCGCggatgcaaaataaataaatgtgactgATACTGGCAAACTACGTTTCCTGTATATTAAACCAtcaacatttaaatgtgttgtaCACTGCTATTACAAAACCAGAATacacacttttttatatatgtatttatataaattctGACAGGAATTATATCATTTACAGAATCTtaataaataacagaaataaaagaagagCAACGAAGAAAAGACTCGAGAAAGAAAATATCAAAACATAAACAGAACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651834.1 True 717 lncRNA 0.36 2 30516195 30519886

Neighbor

gene id symbol gene type direction distance location
LOC103026930 LOC103026930,LOC108411508,LOC105017614,LOC107714796,LOC107670243,LOC107565462,LOC107550532,LOC107676708 coding upstream 35855 30450102 ~ 30480340 (+)
ylpm1 ylpm1,LOC108411503,LOC107729078,LOC107685771 coding upstream 82905 30414115 ~ 30433290 (+)
LOC103040669 LOC108411512,LOC102303064,LOC101467994 coding upstream 122421 30375575 ~ 30393774 (+)
LOC103028785 LOC103028785,LOC108412595,LOC105899448,LOC107695994,LOC107582101 coding upstream 220277 30283641 ~ 30295918 (+)
LOC103041619 NA coding upstream 266447 30227545 ~ 30249748 (+)
LOC103029213 NA coding downstream 552261 31072147 ~ 31076057 (+)
LOC103029526 NA coding downstream 563619 31083505 ~ 31089458 (+)
LOC103029852 NA coding downstream 579685 31099571 ~ 31103340 (+)
plb1 NA coding downstream 601509 31121395 ~ 31149177 (+)
LOC103028275 ppp1cb,LOC107583611,LOC108426284,LOC107582864 coding downstream 630540 31150426 ~ 31162648 (+)
G22614 NA non-coding upstream 69238 30440505 ~ 30446957 (+)
G22576 NA non-coding upstream 211579 30304295 ~ 30304616 (+)
G22558 NA non-coding upstream 250905 30265025 ~ 30265290 (+)
G22556 NA non-coding upstream 251549 30264370 ~ 30264646 (+)
G22456 NA non-coding upstream 510701 30000115 ~ 30005494 (+)
G22626 NA non-coding downstream 14442 30534328 ~ 30535041 (+)
G22635 NA non-coding downstream 50541 30570427 ~ 30583460 (+)
G22636 NA non-coding downstream 66579 30586465 ~ 30586802 (+)
G22638 NA non-coding downstream 94651 30614537 ~ 30614862 (+)
G22641 NA non-coding downstream 118940 30638826 ~ 30640074 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 3369 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 252345 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 1334064 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 1348282 29152052 ~ 29167913 (+)
G22276 NA other upstream 1527364 28988568 ~ 28988831 (+)
G22834 NA other downstream 974459 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 2302458 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 2317166 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 2556738 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 2563756 33083642 ~ 33169392 (+)

Expression


Co-expression Network