LOC111195982


Basic Information

Item Value
gene id LOC111195982
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33501237 ~ 33502351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651920.1
TAACATCACGctccgaagatcacgtgacaggtaGCGCCCACGGCCAGCAGTAGGGCAGAGAACCACTCATTGCGAGTCACAGCTCCGCTGCTGCTCTCCAGAaggttgAAAAGAAGATTGAGAAGTTTCAGCTTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggatTATGACTAGGAACCACATTATTTGCaacagcttttattatttatacaaacaagATGAACATGAAATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651920.1 True 348 lncRNA 0.42 2 33501237 33502351

Neighbor

gene id symbol gene type direction distance location
cfap61 NA coding upstream 2916 33444402 ~ 33498321 (+)
naa20 naa20 coding upstream 64433 33431923 ~ 33436804 (+)
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding upstream 425097 33070811 ~ 33076140 (+)
filip1 filip1 coding upstream 433510 33016420 ~ 33067727 (+)
kif13b kif13b coding upstream 531218 32931610 ~ 32970019 (+)
insm1 NA coding downstream 5723 33508074 ~ 33511617 (+)
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding downstream 123135 33625486 ~ 33649657 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding downstream 173724 33676075 ~ 33681836 (+)
ndufaf7 ndufaf7 coding downstream 287231 33789582 ~ 33798774 (+)
LOC103030910 LOC108444009 coding downstream 480843 33983194 ~ 34046385 (+)
G23289 NA non-coding upstream 140638 33360380 ~ 33360599 (+)
G23286 NA non-coding upstream 147976 33353000 ~ 33353261 (+)
G23282 NA non-coding upstream 155177 33345812 ~ 33346060 (+)
G23255 NA non-coding upstream 293705 33207312 ~ 33207532 (+)
G23253 NA non-coding upstream 310522 33189961 ~ 33190715 (+)
G23349 NA non-coding downstream 66043 33568394 ~ 33568942 (+)
G23356 NA non-coding downstream 76916 33579267 ~ 33579522 (+)
G23367 nkx2-4 non-coding downstream 148286 33650637 ~ 33654989 (+)
G23427 NA non-coding downstream 383111 33885462 ~ 33887869 (+)
G23462 NA non-coding downstream 544239 34046590 ~ 34047774 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 331845 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 419375 33076624 ~ 33081862 (+)
LOC103042732 NA other upstream 659891 32837052 ~ 32841346 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other upstream 674298 32822344 ~ 32826939 (+)
G22834 NA other upstream 2006339 31494345 ~ 31494898 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 85178 33587529 ~ 33595711 (+)
cebpzos cebpzos other downstream 275591 33777942 ~ 33779903 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 391985 33894336 ~ 33964508 (+)
trdn NA other downstream 1724447 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 2541080 36043431 ~ 36096726 (+)

Expression


Co-expression Network